Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s31.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4599.40 37019.47
2. MT-CO3 MT-CO3 4235.60 34091.33
3. MT-ND5 MT-ND5 3175.40 25558.03
4. MT-CYB MT-CYB 2614.12 21040.42
5. gga-mir-3533 ENSGALG00000027736 2453.01 19743.69 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. gga-mir-3527 gga-mir-3527 2260.72 18195.99
7. MT-ND4 MT-ND4 2250.33 18112.37
8. MT-ND1 MT-ND1 2063.23 16606.44
9. EEF1A EEF1A 1834.56 14765.93
10. MT-CO1 MT-CO1 1746.21 14054.83
11. MT-ND3 MT-ND3 1262.89 10164.70
12. GAPDH ENSGALG00000014442 815.94 6567.31 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 753.57 6065.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPL5 ENSGALG00000005922 753.57 6065.30 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. PPIA ENSGALG00000028600 691.21 5563.38 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. TMSB4X ENSGALG00000026383 618.45 4977.76 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. RPS3 ENSGALG00000017330 550.89 4433.98 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. MDK ENSGALG00000008367 519.71 4183.02 midkine [Source:NCBI gene;Acc:423196]
19. MT-ND2 MT-ND2 514.51 4141.17
20. RPL15 ENSGALG00000011290 509.31 4099.31 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. ENSGALG00000018384 ENSGALG00000018384 493.72 3973.83
22. RPL26 RPL26 483.33 3890.21
23. RPL7 ENSGALG00000035252 478.13 3848.35 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPS7 ENSGALG00000016392 472.93 3806.50 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL8 ENSGALG00000016232 462.54 3722.87 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPS27A ENSGALG00000036790 457.34 3681.02 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
27. RPL7A ENSGALG00000003197 452.14 3639.17 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL21 ENSGALG00000027035 446.95 3597.39 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
29. ATP6V0C ENSGALG00000009229 436.55 3513.69 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
30. RPL27A ENSGALG00000005948 431.36 3471.91 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPS11 ENSGALG00000017299 400.17 3220.87 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
32. H3-IX H3-IX 384.58 3095.39
33. RPL18A 384.58 3095.39 ribosomal protein L18a
34. STMN1 ENSGALG00000001475 384.58 3095.39 stathmin 1 [Source:NCBI gene;Acc:396057]
35. RPS15A ENSGALG00000006771 379.39 3053.62 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPS23 ENSGALG00000015617 379.39 3053.62 ribosomal protein S23
37. RPL31 ENSGALG00000016775 368.99 2969.91 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
38. RPS10 ENSGALG00000002813 368.99 2969.91 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. CIRBP ENSGALG00000030918 363.79 2928.06 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. EIF4G2 ENSGALG00000005587 363.79 2928.06 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
41. RPS6 ENSGALG00000015082 358.60 2886.29 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
42. ENSGALG00000018386 ENSGALG00000018386 343.01 2760.81
43. RPL23 ENSGALG00000001634 327.41 2635.24 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
44. RPL27 ENSGALG00000002837 322.22 2593.47 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPL4 ENSGALG00000007711 317.02 2551.62 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
46. EEF1B2 ENSGALG00000008590 306.63 2467.99 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. RPS12 ENSGALG00000013990 306.63 2467.99 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPSA 301.43 2426.14 ribosomal protein SA
49. RPS16 ENSGALG00000026490 296.23 2384.28 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. RPS4 RPS4 296.23 2384.28
51. CRHOA CRHOA 291.04 2342.51
52. RPL14 ENSGALG00000043379 291.04 2342.51 ribosomal protein L14
53. RPL32 ENSGALG00000027142 291.04 2342.51 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
54. RPS20 ENSGALG00000014432 285.84 2300.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
55. RPS24 ENSGALG00000004871 285.84 2300.66 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. ENO1 ENSGALG00000002377 270.25 2175.18 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
57. RPS15 ENSGALG00000015195 270.25 2175.18 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
58. TPT1 ENSGALG00000028872 270.25 2175.18 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
59. RPL13 ENSGALG00000006179 265.05 2133.32 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
60. SLC25A6_1 ENSGALG00000016691 254.66 2049.70 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. ENSGALG00000028992 ENSGALG00000028992 249.46 2007.84
62. H2AFZ ENSGALG00000014023 249.46 2007.84 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
63. MEIS2 ENSGALG00000039118 249.46 2007.84 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
64. RAN ENSGALG00000002569 249.46 2007.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
65. RPL6 ENSGALG00000004818 249.46 2007.84 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
66. EIF1 ENSGALG00000028517 244.26 1965.99 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
67. HMGN5 ENSGALG00000007131 244.26 1965.99 high mobility group nucleosome binding domain 5, transcript variant X1
68. RPS29 ENSGALG00000012229 244.26 1965.99 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. RPLP1 ENSGALG00000030878 239.06 1924.14 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. ATP5G3 233.87 1882.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
71. LUM ENSGALG00000011271 233.87 1882.36 lumican [Source:NCBI gene;Acc:417891]
72. PRDX1 ENSGALG00000010243 233.87 1882.36 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. RPL38 ENSGALG00000001465 233.87 1882.36 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. RPL36 ENSGALG00000000474 223.47 1798.66 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
75. RPS3A ENSGALG00000010077 223.47 1798.66 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
76. ENSGALG00000002696 ENSGALG00000002696 218.28 1756.88
77. RPS8 ENSGALG00000010124 218.28 1756.88 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. HMGN2 HMGN2 213.08 1715.03
79. RPL23A ENSGALG00000003966 213.08 1715.03 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
80. SNRPG ENSGALG00000028409 213.08 1715.03 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
81. CNN3 ENSGALG00000005597 202.69 1631.40 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
82. RPS14 ENSGALG00000004588 197.49 1589.55 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
83. KPNA2 ENSGALG00000003584 192.29 1547.70 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
84. RPL12 ENSGALG00000008806 187.09 1505.84 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
85. EIF4EBP1 ENSGALG00000003205 181.90 1464.07 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
86. RPL35A ENSGALG00000007611, ENSGALG00000041230 181.90 1464.07 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
87. YWHAZ ENSGALG00000031387 181.90 1464.07 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
88. RPL10A ENSGALG00000002644 176.70 1422.22 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. RPLP2 ENSGALG00000034811 176.70 1422.22 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
90. TCEB3 ENSGALG00000034625 176.70 1422.22 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
91. gga-mir-3526 ENSGALG00000029121 176.70 1422.22 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
92. COL1A2 ENSGALG00000009641 171.50 1380.36 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
93. EEF1D 171.50 1380.36 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. EEF2 ENSGALG00000033884 171.50 1380.36 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
95. RPS17 ENSGALG00000002157 171.50 1380.36 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
96. RPL3 ENSGALG00000012172 166.31 1338.59 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
97. ANP32B ENSGALG00000037483 161.11 1296.74 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
98. RPL24 ENSGALG00000015339 155.91 1254.88 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
99. RPL35 ENSGALG00000035677 155.91 1254.88 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
100. RPL37A ENSGALG00000011472 155.91 1254.88 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA