Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s30.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4111.74 33098.72
2. MT-CO3 MT-CO3 3997.01 32175.16
3. MT-ATP6 MT-ATP6 3935.83 31682.67
4. ENSGALG00000018384 ENSGALG00000018384 2395.46 19282.99
5. gga-mir-3533 ENSGALG00000027736 2375.57 19122.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-CYB MT-CYB 2133.88 17177.32
7. gga-mir-3527 gga-mir-3527 1999.27 16093.74
8. MT-ND1 MT-ND1 1941.14 15625.80
9. EEF1A EEF1A 1909.02 15367.24
10. MT-ND4 MT-ND4 1843.25 14837.81
11. MT-CO1 MT-CO1 1763.70 14197.45
12. MT-ND3 MT-ND3 1220.67 9826.16
13. GAPDH ENSGALG00000014442 930.04 7486.64 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. NME2 ENSGALG00000002932 809.19 6513.82 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. PPIA ENSGALG00000028600 744.95 5996.70 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPL5 ENSGALG00000005922 728.12 5861.23 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. MDK ENSGALG00000008367 653.17 5257.89 midkine [Source:NCBI gene;Acc:423196]
18. MT-ND2 MT-ND2 599.63 4826.91
19. TMSB4X ENSGALG00000026383 598.10 4814.59 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL8 ENSGALG00000016232 584.33 4703.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPS3 ENSGALG00000017330 495.61 3989.57 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL15 ENSGALG00000011290 494.08 3977.25 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. ENSGALG00000018386 ENSGALG00000018386 454.31 3657.11
24. RPL26 RPL26 428.31 3447.81
25. RPL7 ENSGALG00000035252 426.78 3435.50 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPS23 ENSGALG00000015617 403.83 3250.75 ribosomal protein S23
27. RPL21 ENSGALG00000027035 397.71 3201.49 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
28. RPS10 ENSGALG00000002813 397.71 3201.49 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPS7 ENSGALG00000016392 397.71 3201.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
30. RPL7A ENSGALG00000003197 394.65 3176.86 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS6 ENSGALG00000015082 390.06 3139.91 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. CIRBP ENSGALG00000030918 383.95 3090.72 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. RPL27A ENSGALG00000005948 377.83 3041.46 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. ATP6V0C ENSGALG00000009229 374.77 3016.83 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. RPS24 ENSGALG00000004871 354.88 2856.72 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
36. H3-IX H3-IX 351.82 2832.08
37. RPL14 ENSGALG00000043379 348.76 2807.45 ribosomal protein L14
38. RPS11 ENSGALG00000017299 347.23 2795.13 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. EEF1B2 ENSGALG00000008590 327.35 2635.10 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
40. RPL31 ENSGALG00000016775 322.76 2598.16 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. RPL4 ENSGALG00000007711 319.70 2573.52 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
42. EIF4G2 ENSGALG00000005587 318.17 2561.21 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
43. RPS4 RPS4 316.64 2548.89
44. RPS16 ENSGALG00000026490 312.05 2511.94 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. STMN1 ENSGALG00000001475 310.52 2499.63 stathmin 1 [Source:NCBI gene;Acc:396057]
46. ENO1 ENSGALG00000002377 307.46 2474.99 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
47. RPS27A ENSGALG00000036790 298.28 2401.10 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPL27 ENSGALG00000002837 295.23 2376.54 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPS20 ENSGALG00000014432 292.17 2351.91 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
50. RPLP1 ENSGALG00000030878 287.58 2314.96 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
51. RPL32 ENSGALG00000027142 282.99 2278.02 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS3A ENSGALG00000010077 282.99 2278.02 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
53. RPS15A ENSGALG00000006771 279.93 2253.38 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
54. RPL6 ENSGALG00000004818 278.40 2241.07 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. RPSA 276.87 2228.75 ribosomal protein SA
56. ENSGALG00000028992 ENSGALG00000028992 275.34 2216.43
57. SLC25A6_1 ENSGALG00000016691 273.81 2204.12 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. RPL23 ENSGALG00000001634 261.57 2105.59 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
59. RPL18A 255.45 2056.32 ribosomal protein L18a
60. RPL13 ENSGALG00000006179 252.39 2031.69 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
61. RPS8 ENSGALG00000010124 252.39 2031.69 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
62. RAN ENSGALG00000002569 249.34 2007.14 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
63. RPL23A ENSGALG00000003966 246.28 1982.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
64. RPS15 ENSGALG00000015195 235.57 1896.29 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
65. RPS29 ENSGALG00000012229 235.57 1896.29 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
66. RPS14 ENSGALG00000004588 232.51 1871.66 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. LUM ENSGALG00000011271 230.98 1859.34 lumican [Source:NCBI gene;Acc:417891]
68. RPS12 ENSGALG00000013990 230.98 1859.34 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
69. TPT1 ENSGALG00000028872 230.98 1859.34 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
70. MEIS2 ENSGALG00000039118 223.33 1797.76 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
71. HMGN5 ENSGALG00000007131 221.80 1785.45 high mobility group nucleosome binding domain 5, transcript variant X1
72. EIF1 ENSGALG00000028517 212.62 1711.55 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
73. CALM CALM 211.09 1699.23
74. SNRPG ENSGALG00000028409 211.09 1699.23 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
75. CRHOA CRHOA 206.50 1662.29
76. TCEB3 ENSGALG00000034625 200.39 1613.10 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
77. H2AFZ ENSGALG00000014023 197.33 1588.47 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
78. RPL10A ENSGALG00000002644 194.27 1563.84 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. RPL35A ENSGALG00000007611, ENSGALG00000041230 194.27 1563.84 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
80. RPL9 ENSGALG00000000150 191.21 1539.20 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
81. RPL12 ENSGALG00000008806 188.15 1514.57 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
82. RPL38 ENSGALG00000001465 185.09 1489.94 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
83. EEF1D 177.44 1428.36 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. FKBP4 ENSGALG00000014331 177.44 1428.36 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
85. ATP5G3 175.91 1416.04 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
86. RPL3 ENSGALG00000012172 175.91 1416.04 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
87. RPLP2 ENSGALG00000034811 175.91 1416.04 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
88. HNRNPDL ENSGALG00000023199 172.85 1391.41 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
89. CNN3 ENSGALG00000005597 171.32 1379.09 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
90. ANP32B ENSGALG00000037483 169.79 1366.78 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
91. EIF3F ENSGALG00000005326 169.79 1366.78 eukaryotic translation initiation factor 3 subunit F
92. RPS2 ENSGALG00000005490 169.79 1366.78 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
93. DDX5 ENSGALG00000003532 168.26 1354.46 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
94. RPL36 ENSGALG00000000474 168.26 1354.46 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
95. ENSGALG00000002696 ENSGALG00000002696 166.73 1342.14
96. HMGN2 HMGN2 166.73 1342.14
97. RPL37 ENSGALG00000014833 163.67 1317.51 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
98. EIF4EBP1 ENSGALG00000003205 160.61 1292.88 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
99. LDHB ENSGALG00000035836 160.61 1292.88 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
100. GNB2L1 ENSGALG00000000122 159.09 1280.64 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA