Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s28.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 6705.54 53981.03
2. MT-CO3 MT-CO3 3579.38 28814.78
3. MT-ND5 MT-ND5 3571.19 28748.84
4. MT-ATP6 MT-ATP6 3126.16 25166.26
5. gga-mir-3533 ENSGALG00000027736 1998.56 16088.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. EEF1A EEF1A 1993.10 16044.88
7. MT-ND4 MT-ND4 1698.23 13671.11
8. gga-mir-3527 gga-mir-3527 1638.16 13187.54
9. MT-CYB MT-CYB 1561.71 12572.10
10. MT-CO1 MT-CO1 1490.73 12000.70
11. MT-ND1 MT-ND1 1482.54 11934.76
12. ENSGALG00000018386 ENSGALG00000018386 1277.77 10286.32
13. MT-ND3 MT-ND3 1059.34 8527.91
14. MT-ND2 MT-ND2 1032.04 8308.14
15. GAPDH ENSGALG00000014442 890.07 7165.25 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. PPIA ENSGALG00000028600 753.55 6066.24 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. TMSB4X ENSGALG00000026383 660.73 5319.02 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. NME2 ENSGALG00000002932 649.80 5231.03 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
19. RPL5 ENSGALG00000005922 644.34 5187.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL8 ENSGALG00000016232 622.50 5011.26 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL7 ENSGALG00000035252 562.44 4527.76 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
22. MDK ENSGALG00000008367 499.64 4022.21 midkine [Source:NCBI gene;Acc:423196]
23. RPL26 RPL26 447.76 3604.56
24. RPL15 ENSGALG00000011290 428.65 3450.72 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPS7 ENSGALG00000016392 425.92 3428.75 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. CIRBP ENSGALG00000030918 423.19 3406.77 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. RPL27A ENSGALG00000005948 409.54 3296.88 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS10 ENSGALG00000002813 406.81 3274.91 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPS6 ENSGALG00000015082 395.89 3187.00 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPL7A ENSGALG00000003197 382.24 3077.11 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS11 ENSGALG00000017299 371.32 2989.21 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
32. STMN1 ENSGALG00000001475 357.67 2879.32 stathmin 1 [Source:NCBI gene;Acc:396057]
33. EIF4G2 ENSGALG00000005587 354.94 2857.34 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
34. RPSA 352.20 2835.29 ribosomal protein SA
35. RPS27A ENSGALG00000036790 349.47 2813.31 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPL31 ENSGALG00000016775 344.01 2769.35 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RPS4 RPS4 344.01 2769.35
38. H3-IX H3-IX 341.28 2747.38
39. RPL21 ENSGALG00000027035 341.28 2747.38 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPS15A ENSGALG00000006771 338.55 2725.40 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. ENO1 ENSGALG00000002377 330.36 2659.47 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
42. RPS20 ENSGALG00000014432 324.90 2615.51 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. RPL14 ENSGALG00000043379 322.17 2593.54 ribosomal protein L14
44. RPS24 ENSGALG00000004871 297.60 2395.74 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
45. RPL27 ENSGALG00000002837 294.87 2373.77 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. SLC25A6_1 ENSGALG00000016691 292.14 2351.79 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. RPS23 ENSGALG00000015617 289.41 2329.81 ribosomal protein S23
48. TPT1 ENSGALG00000028872 289.41 2329.81 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
49. HMGN5 ENSGALG00000007131 286.68 2307.84 high mobility group nucleosome binding domain 5, transcript variant X1
50. ENSGALG00000028992 ENSGALG00000028992 283.95 2285.86
51. EEF1B2 ENSGALG00000008590 278.49 2241.90 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. RPL32 ENSGALG00000027142 275.76 2219.93 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPS3 ENSGALG00000017330 270.30 2175.97 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
54. RPS3A ENSGALG00000010077 264.84 2132.02 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
55. RPL13 ENSGALG00000006179 253.92 2044.11 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
56. EIF1 ENSGALG00000028517 251.18 2022.05 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
57. RAN ENSGALG00000002569 251.18 2022.05 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
58. RPL4 ENSGALG00000007711 240.26 1934.14 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
59. MEIS2 ENSGALG00000039118 234.80 1890.19 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
60. RPL18A 232.07 1868.21 ribosomal protein L18a
61. RPL35A ENSGALG00000007611, ENSGALG00000041230 226.61 1824.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
62. RPS12 ENSGALG00000013990 226.61 1824.26 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
63. ATP5G3 215.69 1736.35 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
64. RPS16 ENSGALG00000026490 215.69 1736.35 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
65. RPS14 ENSGALG00000004588 212.96 1714.37 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RPL10A ENSGALG00000002644 210.23 1692.40 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
67. RPS21 ENSGALG00000005338 207.50 1670.42 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
68. LDHB ENSGALG00000035836 204.77 1648.44 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. ATP6V0C ENSGALG00000009229 202.04 1626.47 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
70. PRDX1 ENSGALG00000010243 202.04 1626.47 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
71. RPLP1 ENSGALG00000030878 202.04 1626.47 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
72. CRHOA CRHOA 199.31 1604.49
73. RPL23A ENSGALG00000003966 199.31 1604.49 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
74. RPL6 ENSGALG00000004818 199.31 1604.49 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
75. RPL38 ENSGALG00000001465 196.58 1582.51 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
76. H2AFZ ENSGALG00000014023 193.85 1560.53 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
77. SNRPG ENSGALG00000028409 193.85 1560.53 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
78. CALM CALM 191.12 1538.56
79. ENSGALG00000002696 ENSGALG00000002696 188.39 1516.58
80. RPL9 ENSGALG00000000150 188.39 1516.58 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
81. CDC42 ENSGALG00000004796 177.47 1428.67 cell division cycle 42 [Source:NCBI gene;Acc:395917]
82. EEF1D 177.47 1428.67 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. NONO ENSGALG00000005507 177.47 1428.67 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
84. RPL3 ENSGALG00000012172 177.47 1428.67 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. RPS15 ENSGALG00000015195 172.01 1384.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
86. UQCRFS1 ENSGALG00000025819 172.01 1384.72 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:NCBI gene;Acc:415752]
87. HMGB1 ENSGALG00000042875 169.28 1362.74 high mobility group box 1 [Source:NCBI gene;Acc:395724]
88. KPNA2 ENSGALG00000003584 169.28 1362.74 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
89. RPL12 ENSGALG00000008806 169.28 1362.74 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
90. TCEB3 ENSGALG00000034625 169.28 1362.74 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
91. HSPA8 ENSGALG00000006512 166.55 1340.76 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. RPL36AL ENSGALG00000004952 166.55 1340.76 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
93. RPL36 ENSGALG00000000474 163.82 1318.79 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
94. RPS29 ENSGALG00000012229 163.82 1318.79 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
95. HMGN2 HMGN2 161.09 1296.81
96. RPL23 ENSGALG00000001634 161.09 1296.81 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
97. ARF4 ENSGALG00000005622 158.36 1274.83 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
98. CNN3 ENSGALG00000005597 158.36 1274.83 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
99. COL1A2 ENSGALG00000009641 158.36 1274.83 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
100. PDIA6 ENSGALG00000016447 158.36 1274.83 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA