Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s27.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5395.89 43433.30
2. MT-ND5 MT-ND5 4001.91 32212.69
3. MT-CO3 MT-CO3 3966.25 31925.66
4. gga-mir-3533 ENSGALG00000027736 2358.36 18983.22 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. MT-CYB MT-CYB 2139.10 17218.32
6. EEF1A EEF1A 2131.97 17160.93
7. MT-ND1 MT-ND1 1980.45 15941.30
8. gga-mir-3527 gga-mir-3527 1903.80 15324.31
9. MT-ND4 MT-ND4 1730.89 13932.51
10. MT-CO1 MT-CO1 1647.11 13258.13
11. ENSGALG00000018384 ENSGALG00000018384 1447.46 11651.08
12. MT-ND3 MT-ND3 1076.68 8666.55
13. GAPDH ENSGALG00000014442 1039.25 8365.27 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. PPIA ENSGALG00000028600 973.29 7834.33 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. NME2 ENSGALG00000002932 918.03 7389.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. TMSB4X ENSGALG00000026383 770.08 6198.63 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. RPL5 ENSGALG00000005922 752.25 6055.11 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. MDK ENSGALG00000008367 577.56 4648.97 midkine [Source:NCBI gene;Acc:423196]
19. MT-ND2 MT-ND2 532.99 4290.21
20. RPS3 ENSGALG00000017330 509.82 4103.71 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL26 RPL26 506.25 4074.97
22. RPL15 ENSGALG00000011290 490.21 3945.86 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPS7 ENSGALG00000016392 483.08 3888.47 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL7 ENSGALG00000035252 477.73 3845.41 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. RPL8 ENSGALG00000016232 477.73 3845.41 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPS27A ENSGALG00000036790 443.86 3572.78 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
27. CIRBP ENSGALG00000030918 436.73 3515.38 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. RPS23 ENSGALG00000015617 415.34 3343.21 ribosomal protein S23
29. RPL27A ENSGALG00000005948 392.17 3156.71 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPS11 ENSGALG00000017299 383.26 3084.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
31. H3-IX H3-IX 379.69 3056.25
32. RPL7A ENSGALG00000003197 379.69 3056.25 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPL31 ENSGALG00000016775 370.78 2984.53 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. EIF4G2 ENSGALG00000005587 356.52 2869.75 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
35. ATP6V0C ENSGALG00000009229 349.39 2812.36 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. RPS10 ENSGALG00000002813 347.60 2797.95 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. STMN1 ENSGALG00000001475 347.60 2797.95 stathmin 1 [Source:NCBI gene;Acc:396057]
38. RPL27 ENSGALG00000002837 342.26 2754.96 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. SLC25A6_1 ENSGALG00000016691 340.47 2740.56 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
40. RPS20 ENSGALG00000014432 333.34 2683.16 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. RPSA 326.21 2625.77 ribosomal protein SA
42. RPS6 ENSGALG00000015082 322.65 2597.12 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPS24 ENSGALG00000004871 317.30 2554.05 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
44. RPS4 RPS4 308.39 2482.33
45. RPS12 ENSGALG00000013990 303.04 2439.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL21 ENSGALG00000027035 295.91 2381.88 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. RPL32 ENSGALG00000027142 295.91 2381.88 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPL18A 294.13 2367.55 ribosomal protein L18a
49. RAN ENSGALG00000002569 292.34 2353.14 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
50. RPS15A ENSGALG00000006771 290.56 2338.81 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
51. RPL6 ENSGALG00000004818 283.43 2281.42 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
52. RPL13 ENSGALG00000006179 276.30 2224.03 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
53. EEF1B2 ENSGALG00000008590 274.52 2209.70 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. ENO1 ENSGALG00000002377 269.17 2166.64 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
55. HMGN5 ENSGALG00000007131 269.17 2166.64 high mobility group nucleosome binding domain 5, transcript variant X1
56. RPL4 ENSGALG00000007711 269.17 2166.64 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
57. RPS16 ENSGALG00000026490 269.17 2166.64 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. ENSGALG00000028992 ENSGALG00000028992 267.39 2152.31
59. RPL14 ENSGALG00000043379 265.61 2137.98 ribosomal protein L14
60. RPLP1 ENSGALG00000030878 256.69 2066.18 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
61. EIF1 ENSGALG00000028517 254.91 2051.85 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
62. RPL23 ENSGALG00000001634 253.13 2037.53 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
63. RPS3A ENSGALG00000010077 246.00 1980.14 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
64. RPL23A ENSGALG00000003966 244.21 1965.73 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
65. TPT1 ENSGALG00000028872 242.43 1951.40 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
66. RPS29 ENSGALG00000012229 228.17 1836.62 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. CRHOA CRHOA 224.61 1807.96
68. PRDX1 ENSGALG00000010243 224.61 1807.96 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
69. EIF3F ENSGALG00000005326 222.82 1793.55 eukaryotic translation initiation factor 3 subunit F
70. HNRNPDL ENSGALG00000023199 222.82 1793.55 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. RPS14 ENSGALG00000004588 222.82 1793.55 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. ENSGALG00000002696 ENSGALG00000002696 221.04 1779.22
73. LDHB ENSGALG00000035836 217.48 1750.57 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
74. MEIS2 ENSGALG00000039118 217.48 1750.57 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
75. ATP5G3 212.13 1707.50 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
76. SNRPG ENSGALG00000028409 212.13 1707.50 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
77. RPL35A ENSGALG00000007611, ENSGALG00000041230 206.78 1664.44 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
78. NONO ENSGALG00000005507 205.00 1650.11 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
79. CALM CALM 201.43 1621.38
80. RPL36 ENSGALG00000000474 201.43 1621.38 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
81. RPLP2 ENSGALG00000034811 201.43 1621.38 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
82. H2AFZ ENSGALG00000014023 196.08 1578.31 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
83. ENSGALG00000018386 ENSGALG00000018386 194.30 1563.98
84. RPL10A ENSGALG00000002644 188.95 1520.92 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. BTF3L4 ENSGALG00000010570 187.17 1506.59 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
86. EIF4EBP1 ENSGALG00000003205 187.17 1506.59 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
87. FKBP4 ENSGALG00000014331 185.39 1492.27 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
88. RPL12 ENSGALG00000008806 185.39 1492.27 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
89. ANP32B ENSGALG00000037483 181.82 1463.53 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
90. CNN3 ENSGALG00000005597 181.82 1463.53 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
91. RPL9 ENSGALG00000000150 181.82 1463.53 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
92. HMGN2 HMGN2 178.26 1434.87
93. MIF ENSGALG00000006326 176.48 1420.55 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
94. RPL3 ENSGALG00000012172 174.69 1406.14 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
95. RPS8 ENSGALG00000010124 174.69 1406.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
96. RPL38 ENSGALG00000001465 172.91 1391.81 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
97. RPLP0 ENSGALG00000023294 171.13 1377.48 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
98. HSPA8 ENSGALG00000006512 167.56 1348.75 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. RPL19 ENSGALG00000001658 167.56 1348.75 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
100. KPNA2 ENSGALG00000003584 162.22 1305.76 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA