Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s26.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5395.27 43430.25
2. MT-ND5 MT-ND5 5014.32 40363.72
3. MT-CO3 MT-CO3 3807.98 30653.06
4. ENSGALG00000018384 ENSGALG00000018384 3402.85 27391.88
5. gga-mir-3533 ENSGALG00000027736 2211.62 17802.85 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-ND1 MT-ND1 2179.88 17547.36
7. MT-CYB MT-CYB 2123.94 17097.06
8. MT-ND4 MT-ND4 2040.80 16427.81
9. MT-CO1 MT-CO1 1992.43 16038.44
10. gga-mir-3527 gga-mir-3527 1874.51 15089.22
11. EEF1A EEF1A 1749.04 14079.23
12. MT-ND2 MT-ND2 1236.57 9954.00
13. GAPDH ENSGALG00000014442 872.25 7021.34 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. MT-ND3 MT-ND3 773.99 6230.38
15. PPIA ENSGALG00000028600 734.69 5914.03 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. TMSB4X ENSGALG00000026383 713.52 5743.61 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. NME2 ENSGALG00000002932 580.49 4672.76 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
18. MDK ENSGALG00000008367 551.77 4441.58 midkine [Source:NCBI gene;Acc:423196]
19. RPL5 ENSGALG00000005922 503.40 4052.21 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL8 ENSGALG00000016232 480.72 3869.65 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL15 ENSGALG00000011290 464.09 3735.78 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS3 ENSGALG00000017330 450.49 3626.30 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPL7 ENSGALG00000035252 430.84 3468.13 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPL27A ENSGALG00000005948 408.16 3285.56 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPS27A ENSGALG00000036790 394.55 3176.00 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
26. RPS7 ENSGALG00000016392 388.51 3127.38 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. EIF4G2 ENSGALG00000005587 383.97 3090.84 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. RPL26 RPL26 382.46 3078.68
29. RPS6 ENSGALG00000015082 377.93 3042.22 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPS4 RPS4 362.81 2920.51
31. CIRBP ENSGALG00000030918 356.76 2871.81 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. STMN1 ENSGALG00000001475 341.65 2750.18 stathmin 1 [Source:NCBI gene;Acc:396057]
33. RPL21 ENSGALG00000027035 338.62 2725.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
34. RPS23 ENSGALG00000015617 332.57 2677.09 ribosomal protein S23
35. RPL7A ENSGALG00000003197 317.46 2555.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPSA 314.43 2531.06 ribosomal protein SA
37. RPS10 ENSGALG00000002813 302.34 2433.74 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPS24 ENSGALG00000004871 300.83 2421.59 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
39. RPL27 ENSGALG00000002837 290.25 2336.42 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPL32 ENSGALG00000027142 290.25 2336.42 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
41. RPS11 ENSGALG00000017299 288.74 2324.27 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. ENSGALG00000018386 ENSGALG00000018386 287.22 2312.03
43. RPL4 ENSGALG00000007711 285.71 2299.88 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
44. HMGN5 ENSGALG00000007131 282.69 2275.57 high mobility group nucleosome binding domain 5, transcript variant X1
45. RPL18A 275.13 2214.71 ribosomal protein L18a
46. RPL31 ENSGALG00000016775 270.60 2178.25 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
47. RPS15A ENSGALG00000006771 270.60 2178.25 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
48. ATP6V0C ENSGALG00000009229 269.08 2166.01 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
49. EIF1 ENSGALG00000028517 263.04 2117.39 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. RPS3A ENSGALG00000010077 263.04 2117.39 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. RPS20 ENSGALG00000014432 260.01 2093.00 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
52. ENO1 ENSGALG00000002377 258.50 2080.84 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
53. TPT1 ENSGALG00000028872 255.48 2056.53 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
54. SLC25A6_1 ENSGALG00000016691 246.41 1983.52 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
55. RPL6 ENSGALG00000004818 243.38 1959.13 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
56. EEF1B2 ENSGALG00000008590 240.36 1934.82 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
57. RAN ENSGALG00000002569 238.85 1922.67 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
58. RPL13 ENSGALG00000006179 237.34 1910.51 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
59. RPL23A ENSGALG00000003966 237.34 1910.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
60. ENSGALG00000028992 ENSGALG00000028992 235.83 1898.36
61. H3-IX H3-IX 234.31 1886.12
62. RPL14 ENSGALG00000043379 234.31 1886.12 ribosomal protein L14
63. RPS15 ENSGALG00000015195 232.80 1873.97 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
64. LDHB ENSGALG00000035836 226.76 1825.35 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
65. SNRPG ENSGALG00000028409 226.76 1825.35 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
66. PRDX1 ENSGALG00000010243 214.66 1727.95 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
67. RPS29 ENSGALG00000012229 214.66 1727.95 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
68. MEIS2 ENSGALG00000039118 210.13 1691.48 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
69. HMGN2 HMGN2 207.10 1667.09
70. NONO ENSGALG00000005507 207.10 1667.09 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
71. RPL3 ENSGALG00000012172 207.10 1667.09 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
72. RPL23 ENSGALG00000001634 205.59 1654.94 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. RPS16 ENSGALG00000026490 205.59 1654.94 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
74. RPL36 ENSGALG00000000474 204.08 1642.78 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
75. RPL10A ENSGALG00000002644 198.03 1594.08 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. RPLP1 ENSGALG00000030878 193.50 1557.61 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
77. ANP32B ENSGALG00000037483 188.96 1521.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. H2AFZ ENSGALG00000014023 187.45 1508.91 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
79. ENSGALG00000002696 ENSGALG00000002696 185.94 1496.76
80. HMGB1 ENSGALG00000042875 184.43 1484.60 high mobility group box 1 [Source:NCBI gene;Acc:395724]
81. CRHOA CRHOA 182.92 1472.45
82. RPS14 ENSGALG00000004588 181.40 1460.21 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
83. CALM CALM 178.38 1435.90
84. MIF ENSGALG00000006326 178.38 1435.90 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
85. RPL38 ENSGALG00000001465 178.38 1435.90 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
86. RPLP2 ENSGALG00000034811 178.38 1435.90 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
87. BTF3L4 ENSGALG00000010570 176.87 1423.75 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. RPS12 ENSGALG00000013990 176.87 1423.75 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
89. RPL36AL ENSGALG00000004952 175.36 1411.59 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
90. ATP5G3 173.85 1399.44 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. HMGB2 ENSGALG00000010745 173.85 1399.44 high mobility group box 2 [Source:NCBI gene;Acc:396482]
92. CNN3 ENSGALG00000005597 170.82 1375.05 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
93. RPL9 ENSGALG00000000150 166.29 1338.58 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
94. RPS21 ENSGALG00000005338 164.78 1326.43 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
95. RPS8 ENSGALG00000010124 164.78 1326.43 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
96. HNRNPDL ENSGALG00000023199 161.75 1302.04 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
97. EIF3F ENSGALG00000005326 160.24 1289.88 eukaryotic translation initiation factor 3 subunit F
98. EEF1D 158.73 1277.73 eukaryotic translation elongation factor 1 delta, transcript variant X13
99. IGF2BP3 ENSGALG00000010961 158.73 1277.73 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
100. RPL12 ENSGALG00000008806 158.73 1277.73 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA