Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s25.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 7054.44 56787.78
2. MT-ND5 MT-ND5 5182.46 41718.46
3. MT-CO3 MT-CO3 3686.23 29673.91
4. MT-CYB MT-CYB 2208.12 17775.22
5. MT-ND1 MT-ND1 2158.32 17374.34
6. MT-CO1 MT-CO1 2124.37 17101.04
7. MT-ND4 MT-ND4 2097.20 16882.32
8. gga-mir-3533 ENSGALG00000027736 2093.81 16855.03 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. EEF1A EEF1A 2048.54 16490.61
10. gga-mir-3527 gga-mir-3527 1878.77 15123.98
11. ENSGALG00000018384 ENSGALG00000018384 1081.99 8709.95
12. MT-ND3 MT-ND3 980.13 7889.98
13. NME2 ENSGALG00000002932 887.32 7142.87 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. GAPDH ENSGALG00000014442 874.87 7042.65 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. PPIA ENSGALG00000028600 809.23 6514.25 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. TMSB4X ENSGALG00000026383 737.93 5940.29 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. MT-ND2 MT-ND2 722.08 5812.70
18. RPL5 ENSGALG00000005922 542.13 4364.11 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPS3 ENSGALG00000017330 471.96 3799.25 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. RPL15 ENSGALG00000011290 469.69 3780.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL7 ENSGALG00000035252 462.90 3726.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
22. RPL27A ENSGALG00000005948 457.24 3680.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. MDK ENSGALG00000008367 447.06 3598.80 midkine [Source:NCBI gene;Acc:423196]
24. RPL26 RPL26 444.79 3580.53
25. RPL8 ENSGALG00000016232 440.27 3544.14 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. CIRBP ENSGALG00000030918 407.44 3279.87 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. RPS7 ENSGALG00000016392 396.13 3188.82 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. RPL31 ENSGALG00000016775 382.54 3079.42 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
29. EIF4G2 ENSGALG00000005587 378.02 3043.04 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
30. STMN1 ENSGALG00000001475 375.75 3024.76 stathmin 1 [Source:NCBI gene;Acc:396057]
31. RPL23 ENSGALG00000001634 374.62 3015.67 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPS6 ENSGALG00000015082 373.49 3006.57 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. H3-IX H3-IX 364.44 2933.72
34. RPS27A ENSGALG00000036790 362.17 2915.44 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. RPS4 RPS4 362.17 2915.44
36. RPS23 ENSGALG00000015617 349.72 2815.22 ribosomal protein S23
37. RPS10 ENSGALG00000002813 348.59 2806.13 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPS11 ENSGALG00000017299 348.59 2806.13 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPS20 ENSGALG00000014432 348.59 2806.13 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPL7A ENSGALG00000003197 347.46 2797.03 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
41. RPS15A ENSGALG00000006771 346.33 2787.93 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPL27 ENSGALG00000002837 342.93 2760.56 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. RAN ENSGALG00000002569 332.75 2678.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
44. RPS16 ENSGALG00000026490 306.71 2469.00 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. ATP6V0C ENSGALG00000009229 304.45 2450.80 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
46. RPSA 303.32 2441.71 ribosomal protein SA
47. RPL21 ENSGALG00000027035 302.19 2432.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. RPS24 ENSGALG00000004871 301.06 2423.51 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
49. RPL4 ENSGALG00000007711 290.87 2341.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
50. EEF1B2 ENSGALG00000008590 286.34 2305.02 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. RPL18A 284.08 2286.83 ribosomal protein L18a
52. SLC25A6_1 ENSGALG00000016691 279.55 2250.36 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. RPL14 ENSGALG00000043379 277.29 2232.17 ribosomal protein L14
54. RPL32 ENSGALG00000027142 276.16 2223.07 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. SNRPG ENSGALG00000028409 262.57 2113.67 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
56. HMGN5 ENSGALG00000007131 261.44 2104.57 high mobility group nucleosome binding domain 5, transcript variant X1
57. EIF1 ENSGALG00000028517 258.05 2077.29 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
58. RPL23A ENSGALG00000003966 248.99 2004.35 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. RPL13 ENSGALG00000006179 246.73 1986.16 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
60. MEIS2 ENSGALG00000039118 243.33 1958.79 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
61. RPL6 ENSGALG00000004818 243.33 1958.79 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
62. ENSGALG00000028992 ENSGALG00000028992 242.20 1949.69
63. RPS29 ENSGALG00000012229 230.88 1858.57 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
64. LDHB ENSGALG00000035836 229.75 1849.47 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
65. RPL38 ENSGALG00000001465 229.75 1849.47 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. ENO1 ENSGALG00000002377 222.96 1794.81 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
67. RPS12 ENSGALG00000013990 220.70 1776.62 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
68. RPS3A ENSGALG00000010077 219.57 1767.52 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
69. ANP32B ENSGALG00000037483 211.64 1703.69 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
70. KPNA2 ENSGALG00000003584 209.38 1685.50 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
71. EIF3F ENSGALG00000005326 205.99 1658.21 eukaryotic translation initiation factor 3 subunit F
72. HNRNPDL ENSGALG00000023199 203.72 1639.93 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
73. RPL10A ENSGALG00000002644 203.72 1639.93 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RPL37A ENSGALG00000011472 201.46 1621.74 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
75. TPT1 ENSGALG00000028872 201.46 1621.74 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
76. HMGB2 ENSGALG00000010745 198.06 1594.37 high mobility group box 2 [Source:NCBI gene;Acc:396482]
77. HMGN2 HMGN2 195.80 1576.18
78. PRDX1 ENSGALG00000010243 194.67 1567.08 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. RPL12 ENSGALG00000008806 193.54 1557.98 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
80. RPL36 ENSGALG00000000474 193.54 1557.98 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
81. RPS14 ENSGALG00000004588 193.54 1557.98 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
82. CRHOA CRHOA 192.40 1548.81
83. RPS15 ENSGALG00000015195 190.14 1530.61 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
84. ATP5G3 186.75 1503.33 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
85. H2AFZ ENSGALG00000014023 182.22 1466.86 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
86. ENSGALG00000002696 ENSGALG00000002696 179.95 1448.59
87. FKBP4 ENSGALG00000014331 179.95 1448.59 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
88. RPLP1 ENSGALG00000030878 179.95 1448.59 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
89. RPLP2 ENSGALG00000034811 179.95 1448.59 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
90. CALM CALM 176.56 1421.30
91. RPS21 ENSGALG00000005338 174.30 1403.10 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
92. RPL3 ENSGALG00000012172 173.16 1393.93 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. CNN3 ENSGALG00000005597 168.64 1357.54 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
94. RPL35A ENSGALG00000007611, ENSGALG00000041230 167.50 1348.36 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
95. NONO ENSGALG00000005507 164.11 1321.07 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
96. YWHAZ ENSGALG00000031387 162.98 1311.98 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
97. RPL36AL ENSGALG00000004952 161.85 1302.88 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
98. RPL9 ENSGALG00000000150 160.71 1293.71 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
99. HSPE1 ENSGALG00000009070 158.45 1275.51 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
100. CDC42 ENSGALG00000004796 155.05 1248.14 cell division cycle 42 [Source:NCBI gene;Acc:395917]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA