Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s22.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3855.44 31036.76
2. ENSGALG00000018384 ENSGALG00000018384 3037.89 24455.38
3. MT-ATP6 MT-ATP6 2884.21 23218.24
4. EEF1A EEF1A 2255.19 18154.55
5. MT-ND5 MT-ND5 2111.34 16996.54
6. MT-CO1 MT-CO1 1878.13 15119.17
7. MT-CYB MT-CYB 1787.00 14385.57
8. gga-mir-3527 gga-mir-3527 1748.58 14076.28
9. gga-mir-3533 ENSGALG00000027736 1735.17 13968.33 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND4 MT-ND4 1648.50 13270.62
11. GAPDH ENSGALG00000014442 1236.60 9954.78 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1227.67 9882.89
13. MT-ND3 MT-ND3 967.66 7789.78
14. PPIA ENSGALG00000028600 721.05 5804.54 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. RPL5 ENSGALG00000005922 688.89 5545.65 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. TMSB4X ENSGALG00000026383 684.42 5509.66 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. NME2 ENSGALG00000002932 629.92 5070.93 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
18. RPL8 ENSGALG00000016232 619.19 4984.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. MT-ND2 MT-ND2 578.99 4660.94
20. RPS3 ENSGALG00000017330 566.48 4560.23 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL7 ENSGALG00000035252 547.71 4409.13 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
22. RPL26 RPL26 507.51 4085.52
23. RPS4 RPS4 472.66 3804.97
24. RPS6 ENSGALG00000015082 466.41 3754.66 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
25. RPL27A ENSGALG00000005948 453.00 3646.70 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL15 ENSGALG00000011290 449.43 3617.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPS23 ENSGALG00000015617 436.03 3510.09 ribosomal protein S23
28. STMN1 ENSGALG00000001475 431.56 3474.11 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPS7 ENSGALG00000016392 419.94 3380.57 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
30. RPS10 ENSGALG00000002813 416.37 3351.83 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. CIRBP ENSGALG00000030918 409.22 3294.27 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. MDK ENSGALG00000008367 402.97 3243.96 midkine [Source:NCBI gene;Acc:423196]
33. RPL7A ENSGALG00000003197 401.18 3229.55 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL23 ENSGALG00000001634 395.82 3186.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. RPL27 ENSGALG00000002837 377.95 3042.54 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. RPSA 369.91 2977.82 ribosomal protein SA
37. EIF4G2 ENSGALG00000005587 368.12 2963.41 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
38. RAN ENSGALG00000002569 368.12 2963.41 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
39. RPS20 ENSGALG00000014432 364.55 2934.67 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPL21 ENSGALG00000027035 360.97 2905.85 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. RPS27A ENSGALG00000036790 359.19 2891.52 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. ENSGALG00000018386 ENSGALG00000018386 348.46 2805.15
43. HMGN5 ENSGALG00000007131 346.68 2790.82 high mobility group nucleosome binding domain 5, transcript variant X1
44. SLC25A6_1 ENSGALG00000016691 331.49 2668.53 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
45. RPS24 ENSGALG00000004871 330.59 2661.29 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
46. ENO1 ENSGALG00000002377 327.91 2639.72 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
47. H3-IX H3-IX 327.91 2639.72
48. RPL18A 326.13 2625.39 ribosomal protein L18a
49. EEF1B2 ENSGALG00000008590 321.66 2589.40 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
50. RPL32 ENSGALG00000027142 318.09 2560.66 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. RPS16 ENSGALG00000026490 318.09 2560.66 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. ENSGALG00000028992 ENSGALG00000028992 314.51 2531.84
53. RPS11 ENSGALG00000017299 311.83 2510.27 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. RPL14 ENSGALG00000043379 309.15 2488.69 ribosomal protein L14
55. RPL31 ENSGALG00000016775 301.11 2423.97 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
56. RPL4 ENSGALG00000007711 285.92 2301.69 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
57. RPS15 ENSGALG00000015195 281.45 2265.71 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
58. RPS15A ENSGALG00000006771 262.69 2114.69 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
59. RPL6 ENSGALG00000004818 257.33 2071.54 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
60. HNRNPDL ENSGALG00000023199 249.29 2006.81 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
61. RPLP1 ENSGALG00000030878 249.29 2006.81 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. CRHOA CRHOA 246.61 1985.24
63. SNRPG ENSGALG00000028409 243.92 1963.59 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
64. RPL23A ENSGALG00000003966 242.14 1949.26 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
65. RPL10A ENSGALG00000002644 241.24 1942.01 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
66. RPS12 ENSGALG00000013990 238.56 1920.44 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
67. RPL13 ENSGALG00000006179 237.67 1913.27 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
68. H2AFZ ENSGALG00000014023 234.10 1884.53 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
69. RPL36 ENSGALG00000000474 232.31 1870.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPS29 ENSGALG00000012229 225.16 1812.57 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
71. RPS3A ENSGALG00000010077 225.16 1812.57 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
72. RPS14 ENSGALG00000004588 219.80 1769.42 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. ATP6V0C ENSGALG00000009229 208.19 1675.95 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
74. RPL38 ENSGALG00000001465 205.50 1654.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. LDHB ENSGALG00000035836 204.61 1647.14 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. RPS8 ENSGALG00000010124 202.82 1632.73 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
77. CALM CALM 200.14 1611.15
78. ATP5G3 196.57 1582.41 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. RPL3 ENSGALG00000012172 192.10 1546.43 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
80. RPL35A ENSGALG00000007611, ENSGALG00000041230 191.21 1539.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
81. MIF ENSGALG00000006326 189.42 1524.85 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
82. RPL35 ENSGALG00000035677 189.42 1524.85 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
83. HMGB1 ENSGALG00000042875 188.53 1517.69 high mobility group box 1 [Source:NCBI gene;Acc:395724]
84. PRDX1 ENSGALG00000010243 188.53 1517.69 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
85. ENSGALG00000002696 ENSGALG00000002696 187.63 1510.44
86. TPT1 ENSGALG00000028872 187.63 1510.44 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
87. TCEB3 ENSGALG00000034625 186.74 1503.28 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
88. KPNA2 ENSGALG00000003584 182.27 1467.30 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
89. RPLP2 ENSGALG00000034811 177.81 1431.39 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
90. ANP32B ENSGALG00000037483 176.91 1424.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
91. BTF3L4 ENSGALG00000010570 176.02 1416.98 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
92. CNN3 ENSGALG00000005597 176.02 1416.98 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
93. CDK1 ENSGALG00000003085 172.45 1388.24 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
94. RPS2 ENSGALG00000005490 170.66 1373.83 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
95. EIF1 ENSGALG00000028517 169.76 1366.59 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
96. MEIS2 ENSGALG00000039118 169.76 1366.59 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
97. RPL24 ENSGALG00000015339 169.76 1366.59 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
98. YWHAZ ENSGALG00000031387 166.19 1337.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
99. HMGN2 HMGN2 164.40 1323.44
100. EEF1D 163.51 1316.28 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA