Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s2.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4855.63 39084.19
2. MT-ND5 MT-ND5 4287.55 34511.57
3. MT-CO3 MT-CO3 3991.26 32126.65
4. gga-mir-3527 gga-mir-3527 2397.21 19295.75
5. MT-ND1 MT-ND1 2195.19 17669.64
6. MT-ND4 MT-ND4 2126.63 17117.78
7. MT-CYB MT-CYB 1976.04 15905.64
8. MT-CO1 MT-CO1 1758.11 14151.47
9. EEF1A EEF1A 1546.31 12446.64
10. ENSGALG00000018384 ENSGALG00000018384 1319.81 10623.48
11. GAPDH ENSGALG00000014442 1289.20 10377.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 1281.86 10318.01
13. NME2 ENSGALG00000002932 1120.25 9017.17 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND2 MT-ND2 1041.89 8386.43
15. gga-mir-3533 ENSGALG00000027736 1018.63 8199.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
16. PPIA ENSGALG00000028600 983.12 7913.38 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPL5 ENSGALG00000005922 812.94 6543.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL26 RPL26 650.11 5232.90
19. ENSGALG00000018386 ENSGALG00000018386 581.55 4681.04
20. RPL15 ENSGALG00000011290 571.75 4602.16 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS3 ENSGALG00000017330 563.18 4533.18 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL8 ENSGALG00000016232 527.68 4247.43 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPS7 ENSGALG00000016392 510.54 4109.46 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL27A ENSGALG00000005948 492.17 3961.60 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. STMN1 ENSGALG00000001475 468.91 3774.37 stathmin 1 [Source:NCBI gene;Acc:396057]
26. ENO1 ENSGALG00000002377 465.24 3744.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPL31 ENSGALG00000016775 462.79 3725.11 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
28. RPS20 ENSGALG00000014432 451.77 3636.41 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
29. RPL21 ENSGALG00000027035 446.87 3596.97 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
30. RPS10 ENSGALG00000002813 437.08 3518.17 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. RPS23 ENSGALG00000015617 426.06 3429.46 ribosomal protein S23
32. RPL27 ENSGALG00000002837 422.39 3399.92 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. RPS27A ENSGALG00000036790 418.72 3370.38 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
34. RPL7 ENSGALG00000035252 412.59 3321.04 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. RAN ENSGALG00000002569 391.78 3153.54 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
36. RPS15A ENSGALG00000006771 390.56 3143.72 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
37. TMSB4X ENSGALG00000026383 390.56 3143.72 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
38. RPL14 ENSGALG00000043379 388.11 3123.99 ribosomal protein L14
39. HMGN5 ENSGALG00000007131 385.66 3104.27 high mobility group nucleosome binding domain 5, transcript variant X1
40. RPL23 ENSGALG00000001634 383.21 3084.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. RPS16 ENSGALG00000026490 380.76 3064.83 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. RPS24 ENSGALG00000004871 374.64 3015.57 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
43. CRABP-I ENSGALG00000003193 363.62 2926.87 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
44. RPS6 ENSGALG00000015082 357.50 2877.61 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
45. LDHB ENSGALG00000035836 353.83 2848.07 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
46. RPS11 ENSGALG00000017299 352.60 2838.17 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
47. RPS29 ENSGALG00000012229 344.03 2769.18 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
48. RPS3A ENSGALG00000010077 342.81 2759.36 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
49. RPL7A ENSGALG00000003197 340.36 2739.64 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
50. CIRBP ENSGALG00000030918 329.34 2650.94 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
51. EEF1B2 ENSGALG00000008590 328.12 2641.12 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. RPL23A ENSGALG00000003966 324.44 2611.50 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
53. SNRPG ENSGALG00000028409 320.77 2581.96 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. H2AFZ ENSGALG00000014023 319.55 2572.14 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
55. RPL6 ENSGALG00000004818 309.75 2493.26 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
56. EIF4G2 ENSGALG00000005587 307.30 2473.53 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
57. ENSGALG00000028992 ENSGALG00000028992 307.30 2473.53
58. MIF ENSGALG00000006326 302.41 2434.17 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
59. RPSA 301.18 2424.27 ribosomal protein SA
60. RPS4 RPS4 299.96 2414.45
61. RPL32 ENSGALG00000027142 298.73 2404.55 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
62. RPLP1 ENSGALG00000030878 296.28 2384.83 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
63. H3-IX H3-IX 292.61 2355.29
64. RPL18A 288.94 2325.75 ribosomal protein L18a
65. ATP5G3 286.49 2306.03 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. MDK ENSGALG00000008367 284.04 2286.31 midkine [Source:NCBI gene;Acc:423196]
67. RPL13 ENSGALG00000006179 280.37 2256.77 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
68. EIF1 ENSGALG00000028517 271.80 2187.79 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
69. SLC25A6_1 ENSGALG00000016691 266.90 2148.35 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
70. RPL4 ENSGALG00000007711 264.45 2128.62 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
71. RPL38 ENSGALG00000001465 263.23 2118.80 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
72. RPS14 ENSGALG00000004588 262.00 2108.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. RPL35A ENSGALG00000007611, ENSGALG00000041230 258.33 2079.36 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
74. RPL36 ENSGALG00000000474 255.88 2059.64 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
75. ATP6V0C ENSGALG00000009229 252.21 2030.10 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
76. ENSGALG00000002696 ENSGALG00000002696 252.21 2030.10
77. TPT1 ENSGALG00000028872 248.54 2000.56 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
78. RPS12 ENSGALG00000013990 239.97 1931.58 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
79. PRDX1 ENSGALG00000010243 235.07 1892.14 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
80. RPS15 ENSGALG00000015195 227.72 1832.98 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
81. RPS21 ENSGALG00000005338 216.70 1744.27 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
82. TCEB3 ENSGALG00000034625 210.58 1695.01 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
83. HMGB2 ENSGALG00000010745 202.01 1626.03 high mobility group box 2 [Source:NCBI gene;Acc:396482]
84. MT-ATP8 MT-ATP8 195.89 1576.77
85. RPL12 ENSGALG00000008806 195.89 1576.77 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
86. RPL37A ENSGALG00000011472 195.89 1576.77 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
87. RPL3 ENSGALG00000012172 190.99 1537.33 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
88. SNRPE ENSGALG00000000137 190.99 1537.33 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
89. RPL10A ENSGALG00000002644 189.77 1527.51 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
90. RPL9 ENSGALG00000000150 188.54 1517.61 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. EIF3F ENSGALG00000005326 187.32 1507.79 eukaryotic translation initiation factor 3 subunit F
92. HNRNPDL ENSGALG00000023199 183.65 1478.24 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. HSPE1 ENSGALG00000009070 181.20 1458.52 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
94. RPL24 ENSGALG00000015339 181.20 1458.52 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
95. RPS2 ENSGALG00000005490 181.20 1458.52 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
96. NDUFB9 ENSGALG00000042242 179.97 1448.62 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
97. ERH ENSGALG00000017384 177.53 1428.98 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
98. RPS8 ENSGALG00000010124 177.53 1428.98 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
99. RPLP2 ENSGALG00000034811 176.30 1419.08 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
100. RPL29 ENSGALG00000026978 173.85 1399.36 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA