Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s13.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3423.69 27557.93
2. MT-ND5 MT-ND5 3035.49 24433.23
3. MT-ATP6 MT-ATP6 2543.50 20473.11
4. ENSGALG00000018384 ENSGALG00000018384 2281.90 18367.44
5. EEF1A EEF1A 1975.56 15901.66
6. MT-CYB MT-CYB 1685.26 13564.98
7. MT-CO1 MT-CO1 1608.47 12946.88
8. gga-mir-3533 ENSGALG00000027736 1481.88 11927.93 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 1428.72 11500.04
10. MT-ND4 MT-ND4 1378.93 11099.27
11. MT-ND1 MT-ND1 1108.04 8918.82
12. GAPDH ENSGALG00000014442 1029.55 8287.04 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 837.14 6738.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 763.73 6147.41 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. MT-ND3 MT-ND3 692.84 5576.80
16. MT-ND2 MT-ND2 611.82 4924.65
17. RPL8 ENSGALG00000016232 597.48 4809.23 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. TMSB4X ENSGALG00000026383 555.28 4469.55 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPL5 ENSGALG00000005922 524.06 4218.26 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL26 RPL26 496.21 3994.09
21. CIRBP ENSGALG00000030918 492.84 3966.96 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
22. ENO1 ENSGALG00000002377 456.55 3674.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPL7 ENSGALG00000035252 454.02 3654.49 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPS3 ENSGALG00000017330 450.64 3627.29 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. EIF4G2 ENSGALG00000005587 446.42 3593.32 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. ENSGALG00000018386 ENSGALG00000018386 426.17 3430.32
27. RPL7A ENSGALG00000003197 425.32 3423.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL27A ENSGALG00000005948 420.26 3382.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPS6 ENSGALG00000015082 407.60 3280.85 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPS7 ENSGALG00000016392 407.60 3280.85 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. RPL21 ENSGALG00000027035 396.63 3192.55 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
32. STMN1 ENSGALG00000001475 394.94 3178.95 stathmin 1 [Source:NCBI gene;Acc:396057]
33. RPL23 ENSGALG00000001634 392.41 3158.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. HMGN5 ENSGALG00000007131 382.28 3077.04 high mobility group nucleosome binding domain 5, transcript variant X1
35. MDK ENSGALG00000008367 377.22 3036.32 midkine [Source:NCBI gene;Acc:423196]
36. RPL15 ENSGALG00000011290 359.50 2893.68 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
37. RPS4 RPS4 357.81 2880.08
38. H3-IX H3-IX 342.62 2757.81
39. RPS27A ENSGALG00000036790 335.03 2696.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPS23 ENSGALG00000015617 334.18 2689.88 ribosomal protein S23
41. RPL27 ENSGALG00000002837 329.12 2649.15 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RPS24 ENSGALG00000004871 329.12 2649.15 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
43. ATP6V0C ENSGALG00000009229 324.06 2608.42 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
44. RPS20 ENSGALG00000014432 319.84 2574.45 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
45. RAN ENSGALG00000002569 318.15 2560.85 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. RPS10 ENSGALG00000002813 315.62 2540.49 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
47. RPL31 ENSGALG00000016775 308.87 2486.15 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
48. RPS11 ENSGALG00000017299 301.27 2424.98 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPL18A 297.90 2397.85 ribosomal protein L18a
50. SLC25A6_1 ENSGALG00000016691 297.05 2391.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. RPSA 291.99 2350.28 ribosomal protein SA
52. RPL14 ENSGALG00000043379 291.14 2343.44 ribosomal protein L14
53. RPS16 ENSGALG00000026490 289.46 2329.92 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. CRABP-I ENSGALG00000003193 285.24 2295.95 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
55. RPL32 ENSGALG00000027142 281.02 2261.98 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. LDHB ENSGALG00000035836 277.64 2234.78 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
57. EEF1B2 ENSGALG00000008590 275.95 2221.17 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
58. SNRPG ENSGALG00000028409 273.42 2200.81 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
59. H2AFZ ENSGALG00000014023 259.08 2085.38 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
60. RPL4 ENSGALG00000007711 254.01 2044.57 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
61. RPLP1 ENSGALG00000030878 253.17 2037.81 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. HNRNPDL ENSGALG00000023199 249.79 2010.61 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
63. ENSGALG00000028992 ENSGALG00000028992 248.95 2003.85
64. RPS12 ENSGALG00000013990 243.04 1956.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
65. RPL6 ENSGALG00000004818 239.67 1929.15 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
66. EIF1 ENSGALG00000028517 236.29 1901.94 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
67. ATP5G3 233.76 1881.58 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. MIF ENSGALG00000006326 233.76 1881.58 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
69. RPS15A ENSGALG00000006771 229.54 1847.61 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
70. RPS29 ENSGALG00000012229 228.70 1840.85 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
71. BTF3L4 ENSGALG00000010570 227.85 1834.01 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
72. ENSGALG00000002696 ENSGALG00000002696 227.85 1834.01
73. RPS3A ENSGALG00000010077 225.32 1813.64 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
74. RPL23A ENSGALG00000003966 219.41 1766.07 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
75. RPL35A ENSGALG00000007611, ENSGALG00000041230 213.51 1718.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
76. CALM CALM 210.97 1698.14
77. RPS14 ENSGALG00000004588 210.13 1691.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPL36 ENSGALG00000000474 209.29 1684.61 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
79. FKBP4 ENSGALG00000014331 206.75 1664.17 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
80. RPL13 ENSGALG00000006179 205.91 1657.41 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
81. ACTC1 ENSGALG00000009844 200.00 1609.84 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
82. HMGB1 ENSGALG00000042875 195.78 1575.87 high mobility group box 1 [Source:NCBI gene;Acc:395724]
83. RPL3 ENSGALG00000012172 192.41 1548.74 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
84. HSPA8 ENSGALG00000006512 191.56 1541.90 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
85. CRHOA CRHOA 189.88 1528.38
86. HMGN2 HMGN2 185.66 1494.41
87. NONO ENSGALG00000005507 182.28 1467.21 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
88. PGK1 ENSGALG00000007936 182.28 1467.21 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
89. RPL38 ENSGALG00000001465 178.06 1433.24 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
90. RPS15 ENSGALG00000015195 176.37 1419.64 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
91. CDK1 ENSGALG00000003085 175.53 1412.87 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
92. ERH ENSGALG00000017384 174.69 1406.11 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
93. HSP90AB1 ENSGALG00000010175 173.00 1392.51 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
94. RPL36AL ENSGALG00000004952 173.00 1392.51 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
95. TPT1 ENSGALG00000028872 171.31 1378.91 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. YWHAZ ENSGALG00000031387 171.31 1378.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
97. HSPE1 ENSGALG00000009070 170.47 1372.15 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
98. SNRPE ENSGALG00000000137 170.47 1372.15 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
99. HMGB2 ENSGALG00000010745 168.78 1358.54 high mobility group box 2 [Source:NCBI gene;Acc:396482]
100. EIF3F ENSGALG00000005326 167.94 1351.78 eukaryotic translation initiation factor 3 subunit F
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA