Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s1.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 3232.77 26019.69
2. MT-CO3 MT-CO3 3009.74 24224.58
3. MT-ND5 MT-ND5 3007.49 24206.47
4. EEF1A EEF1A 1944.17 15648.10
5. MT-CYB MT-CYB 1618.64 13027.99
6. MT-CO1 MT-CO1 1571.33 12647.21
7. GAPDH ENSGALG00000014442 1516.14 12203.00 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-ND1 MT-ND1 1490.23 11994.46
9. MT-ND4 MT-ND4 1453.06 11695.29
10. ENSGALG00000018384 ENSGALG00000018384 1440.67 11595.56
11. gga-mir-3527 gga-mir-3527 1298.74 10453.21
12. gga-mir-3533 ENSGALG00000027736 1125.27 9056.99 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. PPIA ENSGALG00000028600 716.39 5766.03 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 713.01 5738.82 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MT-ND3 MT-ND3 604.88 4868.52
16. RPL5 ENSGALG00000005922 599.25 4823.20 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. ENSGALG00000018386 ENSGALG00000018386 593.61 4777.81
18. MT-ND2 MT-ND2 571.09 4596.55
19. ENO1 ENSGALG00000002377 536.17 4315.49 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. RPL8 ENSGALG00000016232 522.65 4206.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL26 RPL26 495.62 3989.11
22. H3-IX H3-IX 491.11 3952.81
23. STMN1 ENSGALG00000001475 473.09 3807.77 stathmin 1 [Source:NCBI gene;Acc:396057]
24. CIRBP ENSGALG00000030918 460.70 3708.05 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. RPS3 ENSGALG00000017330 458.45 3689.94 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
26. RPL7 ENSGALG00000035252 414.52 3336.36 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
27. RPL21 ENSGALG00000027035 410.01 3300.06 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
28. EIF4G2 ENSGALG00000005587 408.88 3290.96 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
29. RPL27A ENSGALG00000005948 404.38 3254.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL15 ENSGALG00000011290 396.49 3191.24 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. HMGN5 ENSGALG00000007131 390.86 3145.93 high mobility group nucleosome binding domain 5, transcript variant X1
32. RPS27A ENSGALG00000036790 390.86 3145.93 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
33. RPS7 ENSGALG00000016392 386.36 3109.71 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
34. TMSB4X ENSGALG00000026383 385.23 3100.61 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
35. RPS4 RPS4 373.97 3009.98
36. RPL7A ENSGALG00000003197 362.70 2919.27 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
37. RPL23 ENSGALG00000001634 358.20 2883.05 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. RPL31 ENSGALG00000016775 353.69 2846.75 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. CRABP-I ENSGALG00000003193 346.93 2792.35 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
40. MDK ENSGALG00000008367 345.81 2783.33 midkine [Source:NCBI gene;Acc:423196]
41. ATP6V0C ENSGALG00000009229 336.79 2710.73 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
42. RPS6 ENSGALG00000015082 332.29 2674.51 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPS23 ENSGALG00000015617 312.01 2511.28 ribosomal protein S23
44. H2AFZ ENSGALG00000014023 305.25 2456.87 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
45. RPS16 ENSGALG00000026490 305.25 2456.87 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPL32 ENSGALG00000027142 296.24 2384.36 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
47. SNRPG ENSGALG00000028409 290.61 2339.04 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
48. RPS10 ENSGALG00000002813 289.49 2330.03 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
49. RPS11 ENSGALG00000017299 283.85 2284.63 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. LDHB ENSGALG00000035836 280.47 2257.43 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
51. RPS20 ENSGALG00000014432 278.22 2239.32 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
52. RAN ENSGALG00000002569 273.72 2203.10 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
53. RPL14 ENSGALG00000043379 273.72 2203.10 ribosomal protein L14
54. HMGB2 ENSGALG00000010745 270.34 2175.89 high mobility group box 2 [Source:NCBI gene;Acc:396482]
55. RPL18A 268.08 2157.70 ribosomal protein L18a
56. RPL27 ENSGALG00000002837 268.08 2157.70 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
57. SLC25A6_1 ENSGALG00000016691 264.70 2130.50 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. HMGB1 ENSGALG00000042875 261.33 2103.37 high mobility group box 1 [Source:NCBI gene;Acc:395724]
59. RPS15A ENSGALG00000006771 256.82 2067.07 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
60. RPS24 ENSGALG00000004871 248.93 2003.57 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
61. ANP32B ENSGALG00000037483 247.81 1994.56 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPS12 ENSGALG00000013990 243.30 1958.26 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
63. MEIS2 ENSGALG00000039118 241.05 1940.15 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
64. EEF1B2 ENSGALG00000008590 237.67 1912.94 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
65. NONO ENSGALG00000005507 237.67 1912.94 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
66. EIF1 ENSGALG00000028517 235.42 1894.83 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
67. HNRNPDL ENSGALG00000023199 234.29 1885.74 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
68. RPSA 233.17 1876.72 ribosomal protein SA
69. RPL4 ENSGALG00000007711 232.04 1867.63 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
70. TPT1 ENSGALG00000028872 232.04 1867.63 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
71. RPL3 ENSGALG00000012172 228.66 1840.42 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
72. ATP5G3 225.28 1813.22 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
73. MIF ENSGALG00000006326 225.28 1813.22 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
74. ENSGALG00000028992 ENSGALG00000028992 223.03 1795.11
75. RPL23A ENSGALG00000003966 223.03 1795.11 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
76. RPS3A ENSGALG00000010077 220.77 1776.92 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
77. HMGN2 HMGN2 212.89 1713.49
78. RPL6 ENSGALG00000004818 209.51 1686.29 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
79. RPLP1 ENSGALG00000030878 209.51 1686.29 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
80. RPS29 ENSGALG00000012229 208.38 1677.19 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
81. RPL35A ENSGALG00000007611, ENSGALG00000041230 207.26 1668.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
82. RPL10A ENSGALG00000002644 200.50 1613.77 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. RPL13 ENSGALG00000006179 200.50 1613.77 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
84. ENSGALG00000002696 ENSGALG00000002696 199.37 1604.68
85. CRHOA CRHOA 197.12 1586.57
86. PRDX1 ENSGALG00000010243 197.12 1586.57 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
87. RPS15 ENSGALG00000015195 191.49 1541.25 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
88. CALM CALM 190.36 1532.16
89. EIF3F ENSGALG00000005326 190.36 1532.16 eukaryotic translation initiation factor 3 subunit F
90. RPL36 ENSGALG00000000474 185.86 1495.94 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
91. RPS14 ENSGALG00000004588 183.60 1477.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
92. IGF2BP3 ENSGALG00000010961 182.48 1468.73 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
93. NUCKS1 ENSGALG00000000708 182.48 1468.73 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
94. BTF3L4 ENSGALG00000010570 181.35 1459.64 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
95. RPLP2 ENSGALG00000034811 181.35 1459.64 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. CDK1 ENSGALG00000003085 175.72 1414.32 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
97. FKBP4 ENSGALG00000014331 174.59 1405.23 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
98. RPS8 ENSGALG00000010124 174.59 1405.23 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
99. KPNA2 ENSGALG00000003584 172.34 1387.12 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
100. RPL12 ENSGALG00000008806 171.21 1378.02 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA