Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s40.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2985.12 24026.92
2. ENSGALG00000018384 ENSGALG00000018384 2273.58 18299.81
3. ENSGALG00000018386 ENSGALG00000018386 1406.40 11319.97
4. EEF1A EEF1A 1050.63 8456.41
5. MT-ATP6 MT-ATP6 1022.83 8232.65
6. RPLP1 ENSGALG00000030878 1022.83 8232.65 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPS10 ENSGALG00000002813 906.10 7293.10 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. gga-mir-3533 ENSGALG00000027736 867.18 6979.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND5 MT-ND5 844.95 6800.91
10. RPLP0 ENSGALG00000023294 844.95 6800.91 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. RPS23 ENSGALG00000015617 822.71 6621.91 ribosomal protein S23
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 811.60 6532.48 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. RPS8 ENSGALG00000010124 783.80 6308.72 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. GAPDH ENSGALG00000014442 728.21 5861.29 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPS6 ENSGALG00000015082 722.65 5816.53 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. MDK ENSGALG00000008367 644.83 5190.17 midkine [Source:NCBI gene;Acc:423196]
17. RPL38 ENSGALG00000001465 644.83 5190.17 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
18. RPS12 ENSGALG00000013990 644.83 5190.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
19. MT-CYB MT-CYB 639.27 5145.42
20. RPL23A ENSGALG00000003966 622.59 5011.16 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
21. gga-mir-3527 gga-mir-3527 605.92 4876.99
22. RPL7A ENSGALG00000003197 594.80 4787.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL8 ENSGALG00000016232 589.24 4742.73 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPL4 ENSGALG00000007711 567.01 4563.80 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
25. RPS11 ENSGALG00000017299 567.01 4563.80 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
26. RPL21 ENSGALG00000027035 555.89 4474.30 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
27. RPL26 RPL26 550.33 4429.55
28. RPL13 ENSGALG00000006179 539.21 4340.04 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
29. RPL27 ENSGALG00000002837 533.65 4295.29 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPSA 522.53 4205.79 ribosomal protein SA
31. RPL14 ENSGALG00000043379 511.42 4116.37 ribosomal protein L14
32. RPL19 ENSGALG00000001658 511.42 4116.37 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. MT-CO1 MT-CO1 494.74 3982.11
34. RPL29 ENSGALG00000026978 494.74 3982.11 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPL6 ENSGALG00000004818 494.74 3982.11 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
36. RPS28 ENSGALG00000024398 494.74 3982.11 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
37. RPL32 ENSGALG00000027142 478.06 3847.85 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. RPL5 ENSGALG00000005922 478.06 3847.85 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
39. RPL27A ENSGALG00000005948 472.50 3803.10 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. RPS21 ENSGALG00000005338 466.95 3758.43 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. RPL15 ENSGALG00000011290 450.27 3624.18 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
42. RPS3A ENSGALG00000010077 444.71 3579.42 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
43. GNB2L1 ENSGALG00000000122 433.59 3489.92 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. RPS15A ENSGALG00000006771 433.59 3489.92 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. RPS2 ENSGALG00000005490 428.03 3445.17 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
46. MT-ND4 MT-ND4 422.47 3400.42
47. RPS4 RPS4 411.36 3310.99
48. RPL36AL ENSGALG00000004952 405.80 3266.24 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
49. RPS16 ENSGALG00000026490 405.80 3266.24 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. ENSGALG00000002696 ENSGALG00000002696 400.24 3221.49
51. MT-ND6 MT-ND6 400.24 3221.49
52. RPS29 ENSGALG00000012229 400.24 3221.49 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
53. RPL23 ENSGALG00000001634 394.68 3176.74 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
54. RPS7 ENSGALG00000016392 394.68 3176.74 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. RPL36 ENSGALG00000000474 389.12 3131.99 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
56. RPS14 ENSGALG00000004588 389.12 3131.99 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
57. RPS15 ENSGALG00000015195 389.12 3131.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
58. RPL24 ENSGALG00000015339 378.00 3042.48 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
59. NME2 ENSGALG00000002932 372.44 2997.73 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. PPIA ENSGALG00000028600 372.44 2997.73 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
61. RPL12 ENSGALG00000008806 366.89 2953.06 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
62. ENO1 ENSGALG00000002377 361.33 2908.31 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
63. RPL37 ENSGALG00000014833 361.33 2908.31 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. RPS27A ENSGALG00000036790 355.77 2863.56 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
65. SNRPD1 ENSGALG00000041334 350.21 2818.80 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
66. TMSB4X ENSGALG00000026383 350.21 2818.80 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
67. ENSGALG00000028992 ENSGALG00000028992 339.09 2729.30
68. RPS25 ENSGALG00000007699 339.09 2729.30 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. RPS20 ENSGALG00000014432 333.53 2684.55 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
70. TCEB3 ENSGALG00000034625 333.53 2684.55 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. NUCKS1 ENSGALG00000000708 316.86 2550.37 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
72. AKAP12 ENSGALG00000036240 305.74 2460.87 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
73. CRHOA CRHOA 300.18 2416.12
74. HBZ ENSGALG00000023740 300.18 2416.12 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
75. RPL35 ENSGALG00000035677 300.18 2416.12 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
76. STMN1 ENSGALG00000001475 300.18 2416.12 stathmin 1 [Source:NCBI gene;Acc:396057]
77. RPLP2 ENSGALG00000034811 294.62 2371.37 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
78. CIRBP ENSGALG00000030918 289.06 2326.61 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
79. MT-ND2 MT-ND2 272.39 2192.44
80. MT-ND3 MT-ND3 266.83 2147.69
81. TXN ENSGALG00000015704 250.15 2013.43 thioredoxin [Source:NCBI gene;Acc:396437]
82. ANP32B ENSGALG00000037483 244.59 1968.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. RPL18A 244.59 1968.68 ribosomal protein L18a
84. RPL31 ENSGALG00000016775 244.59 1968.68 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
85. RPL7 ENSGALG00000035252 244.59 1968.68 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
86. RPS13 ENSGALG00000006096 239.03 1923.93 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
87. RPL10A ENSGALG00000002644 233.47 1879.18 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. NCL ENSGALG00000032930 227.91 1834.42 nucleolin [Source:NCBI gene;Acc:396201]
89. RPS3 ENSGALG00000017330 227.91 1834.42 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
90. UBB ENSGALG00000004509 227.91 1834.42 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
91. EEF1D 222.36 1789.75 eukaryotic translation elongation factor 1 delta, transcript variant X13
92. PRDX1 ENSGALG00000010243 222.36 1789.75 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. ENSGALG00000022570 ENSGALG00000022570 216.80 1745.00
94. PHB2 ENSGALG00000014567 216.80 1745.00 prohibitin 2 [Source:NCBI gene;Acc:771124]
95. HSPA8 ENSGALG00000006512 211.24 1700.25 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
96. HMGN5 ENSGALG00000007131 205.68 1655.50 high mobility group nucleosome binding domain 5, transcript variant X1
97. HSP90B1 ENSGALG00000033789 205.68 1655.50 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
98. ATP5G3 200.12 1610.74 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
99. HBG1 HBG1 200.12 1610.74
100. RPS24 ENSGALG00000004871 200.12 1610.74 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA