Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s23.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3871.61 31165.47
2. EEF1A EEF1A 1413.86 11381.21
3. MT-ATP6 MT-ATP6 1413.24 11376.22
4. RPLP1 ENSGALG00000030878 1307.35 10523.83 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1089.36 8769.07 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. gga-mir-3533 ENSGALG00000027736 1028.94 8282.70 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPS10 ENSGALG00000002813 1025.20 8252.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPLP0 ENSGALG00000023294 997.80 8032.03 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. MT-ND5 MT-ND5 941.74 7580.76
10. RPS23 ENSGALG00000015617 853.92 6873.84 ribosomal protein S23
11. RPS28 ENSGALG00000024398 853.92 6873.84 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
12. RPS8 ENSGALG00000010124 848.94 6833.75 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. ENSGALG00000018384 ENSGALG00000018384 835.86 6728.46
14. gga-mir-3527 gga-mir-3527 802.85 6462.74
15. RPL4 ENSGALG00000007711 766.72 6171.90 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPS12 ENSGALG00000013990 743.68 5986.43 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. RPL27A ENSGALG00000005948 716.27 5765.79 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. RPL23A ENSGALG00000003966 701.32 5645.45 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. MT-CYB MT-CYB 696.96 5610.35
20. RPS15 ENSGALG00000015195 690.11 5555.21 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
21. RPL27 ENSGALG00000002837 676.41 5444.93 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
22. RPL29 ENSGALG00000026978 650.25 5234.35 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
23. RPL13 ENSGALG00000006179 640.91 5159.16 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
24. RPL32 ENSGALG00000027142 640.91 5159.16 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
25. GAPDH ENSGALG00000014442 630.32 5073.91 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
26. RPL26 RPL26 612.26 4928.54
27. RPL8 ENSGALG00000016232 609.77 4908.49 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. MDK ENSGALG00000008367 589.83 4747.98 midkine [Source:NCBI gene;Acc:423196]
29. RPS21 ENSGALG00000005338 586.10 4717.95 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. RPL7A ENSGALG00000003197 580.49 4672.80 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS29 ENSGALG00000012229 559.32 4502.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
32. RPSA 557.45 4487.33 ribosomal protein SA
33. TMSB4X ENSGALG00000026383 554.33 4462.21 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. RPS6 ENSGALG00000015082 530.66 4271.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
35. RPS11 ENSGALG00000017299 527.55 4246.64 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. RPL38 ENSGALG00000001465 521.94 4201.48 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. RPS2 ENSGALG00000005490 518.83 4176.45 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
38. RPS3A ENSGALG00000010077 506.37 4076.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. RPL19 ENSGALG00000001658 495.79 3990.98 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
40. RPS15A ENSGALG00000006771 489.56 3940.83 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. MT-ND4 MT-ND4 482.08 3880.62
42. RPS4 RPS4 480.21 3865.57
43. RPL36AL ENSGALG00000004952 477.10 3840.53 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
44. MT-CO1 MT-CO1 470.87 3790.38
45. RPL15 ENSGALG00000011290 465.89 3750.29 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
46. RPL14 ENSGALG00000043379 465.27 3745.30 ribosomal protein L14
47. RPS16 ENSGALG00000026490 462.77 3725.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPL24 ENSGALG00000015339 460.28 3705.14 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
49. PPIA ENSGALG00000028600 456.55 3675.11 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
50. RPS7 ENSGALG00000016392 443.47 3569.82 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
51. RPL36 ENSGALG00000000474 441.60 3554.77 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
52. RPS14 ENSGALG00000004588 432.25 3479.50 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
53. MT-ND6 MT-ND6 431.63 3474.51
54. RPL21 ENSGALG00000027035 424.78 3419.37 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. RPL5 ENSGALG00000005922 421.04 3389.26 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
56. RPL35 ENSGALG00000035677 418.55 3369.22 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
57. GNB2L1 ENSGALG00000000122 417.31 3359.24 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
58. RPL12 ENSGALG00000008806 416.06 3349.18 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
59. MT-ND3 MT-ND3 414.82 3339.19
60. RPS27A ENSGALG00000036790 403.60 3248.88 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. ENSGALG00000002696 ENSGALG00000002696 390.52 3143.59
62. SNRPD1 ENSGALG00000041334 383.05 3083.45 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
63. TCEB3 ENSGALG00000034625 361.87 2912.96 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. RPL37 ENSGALG00000014833 359.38 2892.92 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
65. RPS25 ENSGALG00000007699 358.76 2887.93 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
66. RPL18A 348.17 2802.68 ribosomal protein L18a
67. RPS20 ENSGALG00000014432 345.68 2782.64 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
68. RPLP2 ENSGALG00000034811 343.81 2767.58 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
69. RPL6 ENSGALG00000004818 341.94 2752.53 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. ENSGALG00000028992 ENSGALG00000028992 338.21 2722.50
71. RPS13 ENSGALG00000006096 327.62 2637.26 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. NME2 ENSGALG00000002932 323.26 2602.16 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
73. RPL23 ENSGALG00000001634 308.93 2486.81 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
74. ANP32B ENSGALG00000037483 298.34 2401.56 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. TXN ENSGALG00000015704 298.34 2401.56 thioredoxin [Source:NCBI gene;Acc:396437]
76. RAN ENSGALG00000002569 293.98 2366.46 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. CIRBP ENSGALG00000030918 292.11 2351.41 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
78. EEF1D 285.89 2301.34 eukaryotic translation elongation factor 1 delta, transcript variant X13
79. MT-ND1 MT-ND1 274.67 2211.02
80. RPL7 ENSGALG00000035252 273.43 2201.04 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
81. ENO1 ENSGALG00000002377 271.56 2185.99 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. CRHOA CRHOA 269.07 2165.94
83. ENSGALG00000028649 ENSGALG00000028649 264.09 2125.86
84. RPL31 ENSGALG00000016775 264.09 2125.86 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
85. RPL37A ENSGALG00000011472 259.10 2085.69 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
86. AKAP12 ENSGALG00000036240 256.61 2065.64 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
87. EIF5A2 ENSGALG00000009309 242.29 1950.37 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
88. PRDX1 ENSGALG00000010243 236.68 1905.21 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. ENSGALG00000018386 ENSGALG00000018386 235.44 1895.23
90. UBB ENSGALG00000004509 234.81 1890.16 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
91. RPL10A ENSGALG00000002644 233.57 1880.18 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. STMN1 ENSGALG00000001475 232.32 1870.12 stathmin 1 [Source:NCBI gene;Acc:396057]
93. HMGN5 ENSGALG00000007131 223.60 1799.92 high mobility group nucleosome binding domain 5, transcript variant X1
94. LDHB ENSGALG00000035836 217.37 1749.77 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
95. NUCKS1 ENSGALG00000000708 209.90 1689.64 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
96. SLC25A6_1 ENSGALG00000016691 205.54 1654.54 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. H3-IX H3-IX 201.80 1624.44
98. RPS24 ENSGALG00000004871 201.18 1619.45 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
99. RPS17 ENSGALG00000002157 199.93 1609.39 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
100. SET ENSGALG00000004701 198.69 1599.40 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA