Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s35.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3910.82 31480.58
2. MT-ATP6 MT-ATP6 3221.85 25934.64
3. MT-ND5 MT-ND5 2781.68 22391.44
4. EEF1A EEF1A 2181.71 17561.92
5. MT-CYB MT-CYB 2008.52 16167.81
6. GAPDH ENSGALG00000014442 1868.81 15043.20 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. gga-mir-3527 gga-mir-3527 1237.26 9959.46
8. MT-ND4 MT-ND4 1210.47 9743.81
9. gga-mir-3533 ENSGALG00000027736 1210.47 9743.81 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. PPIA ENSGALG00000028600 1086.07 8742.44 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. RPS23 ENSGALG00000015617 956.89 7702.59 ribosomal protein S23
12. MT-ND1 MT-ND1 924.36 7440.74
13. NME2 ENSGALG00000002932 767.43 6177.51 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 691.83 5568.96
15. MT-CO1 MT-CO1 669.82 5391.79
16. RPS6 ENSGALG00000015082 633.46 5099.11 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. EIF4G2 ENSGALG00000005587 610.50 4914.29 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. TMSB4X ENSGALG00000026383 600.93 4837.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPL23 ENSGALG00000001634 585.62 4714.01 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
20. ENO1 ENSGALG00000002377 563.61 4536.84 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. RPL5 ENSGALG00000005922 543.51 4375.04 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. RPL15 ENSGALG00000011290 539.69 4344.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPL8 ENSGALG00000016232 529.16 4259.53 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPS7 ENSGALG00000016392 495.67 3989.95 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. ENSGALG00000002696 ENSGALG00000002696 486.10 3912.92
26. STMN1 ENSGALG00000001475 484.19 3897.54 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPL18A 480.36 3866.71 ribosomal protein L18a
28. RPL31 ENSGALG00000016775 438.26 3527.82 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
29. RPL26 RPL26 421.99 3396.86
30. CIRBP ENSGALG00000030918 421.03 3389.13 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPL27A ENSGALG00000005948 415.29 3342.92 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL7A ENSGALG00000003197 404.77 3258.24 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPS27A ENSGALG00000036790 388.50 3127.27 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
34. MDK ENSGALG00000008367 377.02 3034.86 midkine [Source:NCBI gene;Acc:423196]
35. RPL7 ENSGALG00000035252 372.23 2996.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. ATP6V0C ENSGALG00000009229 366.49 2950.10 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
37. HBZ ENSGALG00000023740 357.88 2880.80 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
38. RAN ENSGALG00000002569 352.14 2834.59 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
39. FKBP4 ENSGALG00000014331 351.18 2826.86 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
40. RPS12 ENSGALG00000013990 325.34 2618.86 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
41. H3-IX H3-IX 323.43 2603.49
42. RPL27 ENSGALG00000002837 317.69 2557.28 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. LDHB ENSGALG00000035836 315.77 2541.83 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
44. RPS16 ENSGALG00000026490 314.82 2534.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPS4 RPS4 314.82 2534.18
46. RPS10 ENSGALG00000002813 313.86 2526.45 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
47. SLC25A6_1 ENSGALG00000016691 301.42 2426.31 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. EEF1B2 ENSGALG00000008590 294.72 2372.38 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
49. RPS29 ENSGALG00000012229 292.81 2357.01 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
50. RPS15A ENSGALG00000006771 288.98 2326.18 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
51. RPL14 ENSGALG00000043379 287.07 2310.80 ribosomal protein L14
52. H2AFZ ENSGALG00000014023 286.11 2303.07 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
53. KPNA2 ENSGALG00000003584 284.20 2287.70 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
54. RPL21 ENSGALG00000027035 275.58 2218.31 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. RPS3 ENSGALG00000017330 275.58 2218.31 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
56. RPL36 ENSGALG00000000474 271.76 2187.56 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. RPS20 ENSGALG00000014432 269.84 2172.11 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
58. RPS11 ENSGALG00000017299 267.93 2156.73 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. RPS14 ENSGALG00000004588 266.97 2149.00 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. RPLP1 ENSGALG00000030878 265.06 2133.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
61. RPSA 265.06 2133.63 ribosomal protein SA
62. ATP5G3 263.15 2118.26 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. HBG1 HBG1 263.15 2118.26
64. HMGN5 ENSGALG00000007131 253.58 2041.22 high mobility group nucleosome binding domain 5, transcript variant X1
65. RPS15 ENSGALG00000015195 250.71 2018.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
66. EIF1 ENSGALG00000028517 246.88 1987.29 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
67. RPS8 ENSGALG00000010124 244.96 1971.83 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
68. RPS24 ENSGALG00000004871 239.22 1925.63 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
69. MT-ND2 MT-ND2 235.40 1894.88
70. SNRPG ENSGALG00000028409 235.40 1894.88 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
71. SNRPE ENSGALG00000000137 232.52 1871.70 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
72. MIF ENSGALG00000006326 231.57 1864.05 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
73. HBE 226.78 1825.49 hemoglobin subunit epsilon
74. RPL37 ENSGALG00000014833 222.00 1787.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
75. RPL35A ENSGALG00000007611, ENSGALG00000041230 220.09 1771.64 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
76. RPL38 ENSGALG00000001465 220.09 1771.64 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
77. ANP32B ENSGALG00000037483 218.17 1756.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. RPL10A ENSGALG00000002644 218.17 1756.18 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. CRHOA CRHOA 215.30 1733.08
80. IGF2BP3 ENSGALG00000010961 212.43 1709.98 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
81. TXN ENSGALG00000015704 211.47 1702.25 thioredoxin [Source:NCBI gene;Acc:396437]
82. NDUFB9 ENSGALG00000042242 210.52 1694.60 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
83. HNRNPA3 ENSGALG00000009250 209.56 1686.88 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
84. RPS21 ENSGALG00000005338 207.65 1671.50 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
85. HNRNPDL ENSGALG00000023199 202.86 1632.94 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
86. YWHAZ ENSGALG00000031387 200.95 1617.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
87. ENSGALG00000028992 ENSGALG00000028992 197.12 1586.74
88. HMGN2 HMGN2 197.12 1586.74
89. HSPE1 ENSGALG00000009070 197.12 1586.74 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
90. RPL3 ENSGALG00000012172 195.21 1571.36 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
91. EIF4A2 ENSGALG00000008684 193.29 1555.91 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
92. CRABP-I ENSGALG00000003193 192.34 1548.26 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
93. BTF3L4 ENSGALG00000010570 191.38 1540.53 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
94. EIF5A2 ENSGALG00000009309 191.38 1540.53 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
95. RPL23A ENSGALG00000003966 189.46 1525.08 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
96. RPL32 ENSGALG00000027142 188.51 1517.43 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
97. ENSGALG00000028649 ENSGALG00000028649 187.55 1509.70
98. TPT1 ENSGALG00000028872 185.64 1494.33 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
99. HMGB2 ENSGALG00000010745 183.72 1478.87 high mobility group box 2 [Source:NCBI gene;Acc:396482]
100. RPL13 ENSGALG00000006179 182.77 1471.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA