Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s74.

Sample reads: 235,289. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 12267.00 52139.43 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 10398.00 44195.47
3. HBE 6488.00 27576.47 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 4966.00 21107.39
5. RPLP0 ENSGALG00000023294 3165.00 13452.46 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS15 ENSGALG00000015195 2662.00 11314.52 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. RPS10 ENSGALG00000002813 2283.00 9703.62 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS29 ENSGALG00000012229 2259.00 9601.61 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 2086.00 8866.30 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. gga-mir-3533 ENSGALG00000027736 2065.00 8777.04 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1945.00 8266.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. EEF1A EEF1A 1925.00 8181.98
13. RPL13 ENSGALG00000006179 1856.00 7888.71 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPL4 ENSGALG00000007711 1836.00 7803.70 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPS28 ENSGALG00000024398 1699.00 7221.40 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
16. RPS2 ENSGALG00000005490 1694.00 7200.15 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. RPL23A ENSGALG00000003966 1622.00 6894.12 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPL15 ENSGALG00000011290 1604.00 6817.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS8 ENSGALG00000010124 1555.00 6609.34 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPS21 ENSGALG00000005338 1425.00 6056.79 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. gga-mir-3527 gga-mir-3527 1422.00 6044.04
22. RPLP1 ENSGALG00000030878 1409.00 5988.79 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
23. RPL35 ENSGALG00000035677 1405.00 5971.79 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. PPIA ENSGALG00000028600 1340.00 5695.51 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPS4 RPS4 1312.00 5576.50
26. RPS14 ENSGALG00000004588 1281.00 5444.74 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
27. RPL27A ENSGALG00000005948 1276.00 5423.49 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPL29 ENSGALG00000026978 1267.00 5385.23 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
29. MT-ATP6 MT-ATP6 1218.00 5176.96
30. RPS15A ENSGALG00000006771 1218.00 5176.96 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL7A ENSGALG00000003197 1183.00 5028.20 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPL32 ENSGALG00000027142 1180.00 5015.45 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
33. RPSA 1166.00 4955.94 ribosomal protein SA
34. RPL24 ENSGALG00000015339 1147.00 4875.19 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
35. RPL19 ENSGALG00000001658 1116.00 4743.43 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
36. RPL38 ENSGALG00000001465 1109.00 4713.67 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. MT-ND3 MT-ND3 1071.00 4552.16
38. RPL6 ENSGALG00000004818 1038.00 4411.90 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
39. RPS12 ENSGALG00000013990 998.00 4241.88 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPS11 ENSGALG00000017299 993.00 4220.63 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPL18A 976.00 4148.37 ribosomal protein L18a
42. RPL26 RPL26 973.00 4135.62
43. RPL27 ENSGALG00000002837 961.00 4084.62 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPL36 ENSGALG00000000474 947.00 4025.11 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPS23 ENSGALG00000015617 913.00 3880.60 ribosomal protein S23
46. RPS16 ENSGALG00000026490 905.00 3846.60 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. MT-ND5 MT-ND5 903.00 3838.09
48. MT-ND1 MT-ND1 895.00 3804.09
49. RPS7 ENSGALG00000016392 890.00 3782.84 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. SNRPD1 ENSGALG00000041334 846.00 3595.82 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
51. RPL12 ENSGALG00000008806 837.00 3557.57 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
52. RPS27A ENSGALG00000036790 814.00 3459.81 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPL14 ENSGALG00000043379 811.00 3447.06 ribosomal protein L14
54. MDK ENSGALG00000008367 805.00 3421.56 midkine [Source:NCBI gene;Acc:423196]
55. GNB2L1 ENSGALG00000000122 792.00 3366.30 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
56. RPL8 ENSGALG00000016232 777.00 3302.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
57. RPL37A ENSGALG00000011472 770.00 3272.79 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
58. RPL36AL ENSGALG00000004952 763.00 3243.04 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
59. FTH FTH 759.00 3226.04
60. RPL7 ENSGALG00000035252 751.00 3192.04 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
61. MT-ND6 MT-ND6 735.00 3124.03
62. RPS3A ENSGALG00000010077 704.00 2992.27 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
63. RPL21 ENSGALG00000027035 683.00 2903.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. NME2 ENSGALG00000002932 680.00 2890.26 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. MT-ND4 MT-ND4 676.00 2873.26
66. TMSB4X ENSGALG00000026383 674.00 2864.76 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
67. RPS25 ENSGALG00000007699 672.00 2856.26 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPS13 ENSGALG00000006096 669.00 2843.51 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. RPL5 ENSGALG00000005922 666.00 2830.75 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
70. ENSGALG00000028992 ENSGALG00000028992 656.00 2788.25
71. RPS17 ENSGALG00000002157 643.00 2733.00 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
72. PRDX1 ENSGALG00000010243 626.00 2660.74 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. RPS24 ENSGALG00000004871 619.00 2630.99 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. UBB ENSGALG00000004509 602.00 2558.73 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
75. RPS3 ENSGALG00000017330 592.00 2516.23 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. RPL10A ENSGALG00000002644 569.00 2418.47 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. ANP32B ENSGALG00000037483 568.00 2414.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. EEF1D 545.00 2316.46 eukaryotic translation elongation factor 1 delta, transcript variant X13
79. RPL23 ENSGALG00000001634 543.00 2307.96 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. MT-CYB MT-CYB 528.00 2244.20
81. TCEB3 ENSGALG00000034625 528.00 2244.20 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
82. RPL37 ENSGALG00000014833 518.00 2201.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
83. RPS6 ENSGALG00000015082 505.00 2146.44 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
84. RPS20 ENSGALG00000014432 504.00 2142.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
85. STMN1 ENSGALG00000001475 487.00 2069.94 stathmin 1 [Source:NCBI gene;Acc:396057]
86. CIRBP ENSGALG00000030918 483.00 2052.93 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
87. ALDOC ENSGALG00000026077 482.00 2048.68 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
88. MT-CO1 MT-CO1 448.00 1904.17
89. ZNF593 ENSGALG00000000542 448.00 1904.17 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
90. EIF5A2 ENSGALG00000009309 434.00 1844.67 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. MMP15 ENSGALG00000038758 427.00 1814.91 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
92. ENO1 ENSGALG00000002377 423.00 1797.91 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
93. ENSGALG00000028649 ENSGALG00000028649 412.00 1751.16
94. ATP5L ENSGALG00000006899 409.00 1738.41 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
95. RPL31 ENSGALG00000016775 407.00 1729.91 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
96. RPL22 ENSGALG00000000719 388.00 1649.15 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
97. TXN ENSGALG00000015704 370.00 1572.64 thioredoxin [Source:NCBI gene;Acc:396437]
98. CRHOA CRHOA 367.00 1559.89
99. ENSGALG00000022570 ENSGALG00000022570 355.00 1508.89
100. CHCHD2 ENSGALG00000002495 348.00 1479.13 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA