Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s45.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6470.58 52086.95
2. MT-ND5 MT-ND5 4436.14 35710.09
3. MT-ATP6 MT-ATP6 3742.26 30124.49
4. MT-CYB MT-CYB 2481.72 19977.38
5. MT-ND4 MT-ND4 2239.06 18024.01
6. EEF1A EEF1A 1987.21 15996.66
7. gga-mir-3527 gga-mir-3527 1974.10 15891.13
8. MT-ND3 MT-ND3 1950.49 15701.08
9. gga-mir-3533 ENSGALG00000027736 1769.47 14243.90 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-CO1 MT-CO1 1660.60 13367.52
11. GAPDH ENSGALG00000014442 1284.15 10337.16 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1209.38 9735.28
13. PPIA ENSGALG00000028600 941.80 7581.31 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. MDK ENSGALG00000008367 893.26 7190.57 midkine [Source:NCBI gene;Acc:423196]
15. NME2 ENSGALG00000002932 777.83 6261.38 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPS23 ENSGALG00000015617 735.86 5923.53 ribosomal protein S23
17. RPL5 ENSGALG00000005922 628.30 5057.70 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS6 ENSGALG00000015082 615.18 4952.08 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. ATP6V0C ENSGALG00000009229 569.27 4582.52 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
20. TMSB4X ENSGALG00000026383 502.38 4044.06 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPS3 ENSGALG00000017330 501.07 4033.52 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL26 RPL26 498.44 4012.35
23. RPS7 ENSGALG00000016392 472.21 3801.20 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL23 ENSGALG00000001634 457.78 3685.04 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL8 ENSGALG00000016232 445.98 3590.05 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPL18A 440.73 3547.79 ribosomal protein L18a
27. ENO1 ENSGALG00000002377 432.86 3484.44 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
28. STMN1 ENSGALG00000001475 430.24 3463.35 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPL7A ENSGALG00000003197 418.43 3368.28 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPS27A ENSGALG00000036790 396.13 3188.77 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
31. RPL31 ENSGALG00000016775 394.82 3178.23 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. ENSGALG00000002696 ENSGALG00000002696 373.83 3009.26
33. EIF4G2 ENSGALG00000005587 363.34 2924.82 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
34. RPL15 ENSGALG00000011290 358.09 2882.56 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
35. CIRBP ENSGALG00000030918 354.16 2850.92 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. RPL7 ENSGALG00000035252 354.16 2850.92 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
37. RPL27A ENSGALG00000005948 352.85 2840.38 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. RPS4 RPS4 348.91 2808.66
39. RPS10 ENSGALG00000002813 342.35 2755.85 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
40. SLC25A6_1 ENSGALG00000016691 327.92 2639.69 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
41. EEF1B2 ENSGALG00000008590 320.05 2576.34 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
42. RPS16 ENSGALG00000026490 316.12 2544.71 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. CRHOA CRHOA 304.31 2449.64
44. LUM ENSGALG00000011271 295.13 2375.74 lumican [Source:NCBI gene;Acc:417891]
45. MT-ND2 MT-ND2 292.51 2354.65
46. NDUFB9 ENSGALG00000042242 288.57 2322.93 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
47. RPL36 ENSGALG00000000474 271.52 2185.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. ENSGALG00000028992 ENSGALG00000028992 270.21 2175.14
49. H3-IX H3-IX 267.59 2154.05
50. TXN ENSGALG00000015704 266.27 2143.42 thioredoxin [Source:NCBI gene;Acc:396437]
51. FKBP4 ENSGALG00000014331 262.34 2111.79 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
52. RPL37 ENSGALG00000014833 262.34 2111.79 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. RPS20 ENSGALG00000014432 259.72 2090.70 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. EIF1 ENSGALG00000028517 258.40 2080.07 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
55. ENSGALG00000018384 ENSGALG00000018384 257.09 2069.53
56. RPS12 ENSGALG00000013990 251.85 2027.34 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
57. RPS24 ENSGALG00000004871 250.53 2016.72 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
58. RPL35A ENSGALG00000007611, ENSGALG00000041230 247.91 1995.63 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
59. RPS29 ENSGALG00000012229 246.60 1985.08 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
60. RPL10A ENSGALG00000002644 245.29 1974.54 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
61. RPL38 ENSGALG00000001465 245.29 1974.54 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. ATP5G3 238.73 1921.73 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. RPS14 ENSGALG00000004588 238.73 1921.73 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. RPS11 ENSGALG00000017299 237.42 1911.19 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. RPLP1 ENSGALG00000030878 236.10 1900.56 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
66. RPS15A ENSGALG00000006771 234.79 1890.02 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
67. RPL32 ENSGALG00000027142 228.23 1837.21 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. RPS8 ENSGALG00000010124 225.61 1816.12 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
69. RPL21 ENSGALG00000027035 221.68 1784.48 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. EIF3F ENSGALG00000005326 211.18 1699.96 eukaryotic translation initiation factor 3 subunit F
71. ENSGALG00000018386 ENSGALG00000018386 209.87 1689.41
72. TPT1 ENSGALG00000028872 209.87 1689.41 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
73. RPL27 ENSGALG00000002837 205.94 1657.78 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
74. ERH ENSGALG00000017384 204.62 1647.15 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
75. COX7C ENSGALG00000027963 199.38 1604.97 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
76. RAN ENSGALG00000002569 198.07 1594.43 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. RPL14 ENSGALG00000043379 198.07 1594.43 ribosomal protein L14
78. RPSA 198.07 1594.43 ribosomal protein SA
79. RPL12 ENSGALG00000008806 195.44 1573.26 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
80. TCEB3 ENSGALG00000034625 195.44 1573.26 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. SNRPG ENSGALG00000028409 192.82 1552.16 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
82. RPS15 ENSGALG00000015195 186.26 1499.36 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
83. RPL29 ENSGALG00000026978 179.70 1446.55 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
84. MEIS2 ENSGALG00000039118 178.39 1436.01 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
85. RPS3A ENSGALG00000010077 177.08 1425.46 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
86. CNN3 ENSGALG00000005597 175.77 1414.92 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
87. GAL10 GAL10 175.77 1414.92
88. RPL23A ENSGALG00000003966 175.77 1414.92 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
89. KPNA2 ENSGALG00000003584 174.46 1404.37 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
90. BTF3L4 ENSGALG00000010570 173.14 1393.74 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
91. PDIA6 ENSGALG00000016447 173.14 1393.74 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
92. EEF1D 171.83 1383.20 eukaryotic translation elongation factor 1 delta, transcript variant X13
93. HNRNPDL ENSGALG00000023199 171.83 1383.20 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
94. PNRC1 ENSGALG00000015780 171.83 1383.20 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
95. CALM CALM 170.52 1372.65
96. ANP32B ENSGALG00000037483 169.21 1362.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. H2AFZ ENSGALG00000014023 169.21 1362.11 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
98. RPL3 ENSGALG00000012172 169.21 1362.11 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. HNRNPA3 ENSGALG00000009250 167.90 1351.56 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
100. SEC61G ENSGALG00000037863 167.90 1351.56 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA