Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s81.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5002.59 37500.19
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5002.59 37500.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 3335.06 25000.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. actb2 ENSDARG00000037870 2501.29 18750.06 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2501.29 18750.06 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1667.53 12500.06 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. myl10 ENSDARG00000062592 1667.53 12500.06 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
8. snrnp27 ENSDARG00000035625 1667.53 12500.06 small nuclear ribonucleoprotein 27 (U4/U6.U5) [Source:ZFIN;Acc:ZDB-GENE-040718-457]
9. ATL2 ENSDARG00000057719, ENSDARG00000113378, ENSDARG00000113487 833.76 6249.99 atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
10. ATP10B ENSDARG00000076230 833.76 6249.99 ATPase phospholipid transporting 10B [Source:ZFIN;Acc:ZDB-GENE-130530-796]
11. ATP5B 833.76 6249.99 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
12. CABZ01074130.1 ENSDARG00000105274 833.76 6249.99
13. CT955984.1 ENSDARG00000113577 833.76 6249.99
14. FRMD4A ENSDARG00000042249 833.76 6249.99 FERM domain containing 4A [Source:HGNC Symbol;Acc:HGNC:25491]
15. IDH2 ENSDARG00000003795 833.76 6249.99 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
16. IGLON5 ENSDARG00000022176 833.76 6249.99 IgLON family member 5 [Source:HGNC Symbol;Acc:HGNC:34550]
17. MRPL52 ENSDARG00000090568 833.76 6249.99 mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
18. NDNF ENSDARG00000062936 833.76 6249.99 neuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
19. NEDD4 NEDD4 833.76 6249.99
20. RPL29 ENSDARG00000077717 833.76 6249.99 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
21. SHROOM2 SHROOM2 833.76 6249.99
22. TMEM254 ENSDARG00000109902 833.76 6249.99 transmembrane protein 254 [Source:ZFIN;Acc:ZDB-GENE-040426-1348]
23. acta1b ENSDARG00000055618 833.76 6249.99 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
24. actc1b ENSDARG00000099197 833.76 6249.99 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
25. adnp2b ENSDARG00000028431 833.76 6249.99 ADNP homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5930]
26. ahcy ENSDARG00000005191 833.76 6249.99 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
27. and2 ENSDARG00000079302 833.76 6249.99 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
28. arl8bb ENSDARG00000070318 833.76 6249.99 ADP-ribosylation factor-like 8Bb [Source:ZFIN;Acc:ZDB-GENE-080516-10]
29. asb4 ENSDARG00000034988 833.76 6249.99 ankyrin repeat and SOCS box containing 4 [Source:ZFIN;Acc:ZDB-GENE-050417-100]
30. atg5 ENSDARG00000023396 833.76 6249.99 ATG5 autophagy related 5 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040801-149]
31. atp1b3a ENSDARG00000015790 833.76 6249.99 ATPase Na+/K+ transporting subunit beta 3a [Source:ZFIN;Acc:ZDB-GENE-990415-167]
32. atp5a1 833.76 6249.99 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
33. bin3 ENSDARG00000099651 833.76 6249.99 bridging integrator 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2696]
34. btf3 ENSDARG00000035400, ENSDARG00000116462 833.76 6249.99 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
35. cd81 cd81 833.76 6249.99
36. cdc25 cdc25 833.76 6249.99
37. celf2 ENSDARG00000002131, ENSDARG00000110267 833.76 6249.99 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
38. cenpf ENSDARG00000055133 833.76 6249.99 centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
39. cfl1l ENSDARG00000012972 833.76 6249.99 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
40. chchd3 chchd3 833.76 6249.99
41. cirbp cirbp 833.76 6249.99
42. ckmb ENSDARG00000040565 833.76 6249.99 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
43. col11a1b ENSDARG00000009014 833.76 6249.99 collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
44. cox4i1 ENSDARG00000032970 833.76 6249.99 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
45. eef1a1l1 ENSDARG00000020850 833.76 6249.99 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
46. eef1g ENSDARG00000056119 833.76 6249.99 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
47. eef2b ENSDARG00000100371, ENSDARG00000109247 833.76 6249.99 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
48. efemp2a ENSDARG00000094324 833.76 6249.99 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
49. efnb3b ENSDARG00000042277 833.76 6249.99 ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
50. eif1b ENSDARG00000012688 833.76 6249.99 eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
51. eif3s6ip ENSDARG00000101082 833.76 6249.99 eukaryotic translation initiation factor 3, subunit 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2138]
52. enpp1 ENSDARG00000005789 833.76 6249.99 ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-172]
53. eppk1 ENSDARG00000096359 833.76 6249.99 epiplakin 1 [Source:ZFIN;Acc:ZDB-GENE-030416-1]
54. fam105bb fam105bb 833.76 6249.99
55. fam50a ENSDARG00000024895 833.76 6249.99 family with sequence similarity 50, member A [Source:ZFIN;Acc:ZDB-GENE-050417-110]
56. fbp1b ENSDARG00000020364, ENSDARG00000111266 833.76 6249.99 fructose-1,6-bisphosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-021206-11]
57. gamt ENSDARG00000070844, ENSDARG00000109945 833.76 6249.99 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
58. glulb ENSDARG00000100003, ENSDARG00000113742 833.76 6249.99 glutamate-ammonia ligase (glutamine synthase) b [Source:ZFIN;Acc:ZDB-GENE-030131-8417]
59. gpx4b ENSDARG00000076836 833.76 6249.99 glutathione peroxidase 4b [Source:ZFIN;Acc:ZDB-GENE-030410-3]
60. hirip3 ENSDARG00000027749, ENSDARG00000115688 833.76 6249.99 HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
61. histh1l ENSDARG00000035519 833.76 6249.99 histone H1 like [Source:ZFIN;Acc:ZDB-GENE-050417-145]
62. hmgn2 ENSDARG00000099572 833.76 6249.99 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
63. hsp90aa1.1 ENSDARG00000010478 833.76 6249.99 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
64. icn ENSDARG00000009978 833.76 6249.99 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
65. idh3g ENSDARG00000023648 833.76 6249.99 isocitrate dehydrogenase 3 (NAD+) gamma [Source:ZFIN;Acc:ZDB-GENE-050417-435]
66. il1rapl1a ENSDARG00000062045, ENSDARG00000115285 833.76 6249.99 interleukin 1 receptor accessory protein-like 1a [Source:ZFIN;Acc:ZDB-GENE-061013-249]
67. khdrbs1a ENSDARG00000052856 833.76 6249.99 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
68. kif3cb ENSDARG00000079500 833.76 6249.99 kinesin family member 3Cb [Source:ZFIN;Acc:ZDB-GENE-080709-4]
69. ldb3b ENSDARG00000099974 833.76 6249.99 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
70. lemd3 ENSDARG00000015824 833.76 6249.99 LEM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-490]
71. lyrm2 ENSDARG00000033138 833.76 6249.99 LYR motif containing 2 [Source:ZFIN;Acc:ZDB-GENE-040914-27]
72. macc1 ENSDARG00000040717 833.76 6249.99 metastasis associated in colon cancer 1 [Source:ZFIN;Acc:ZDB-GENE-091006-3]
73. meaf6 ENSDARG00000101216 833.76 6249.99 MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
74. mkln1 ENSDARG00000025576 833.76 6249.99 muskelin 1, intracellular mediator containing kelch motifs [Source:ZFIN;Acc:ZDB-GENE-030131-3942]
75. mrpl12 ENSDARG00000038768 833.76 6249.99 mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]
76. mt-co2 ENSDARG00000063908 833.76 6249.99 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
77. mt-co3 ENSDARG00000063912 833.76 6249.99 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
78. mt-cyb ENSDARG00000063924 833.76 6249.99 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
79. myl12.1 ENSDARG00000099766 833.76 6249.99 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
80. mylz3 ENSDARG00000017441 833.76 6249.99 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
81. nap1l4a ENSDARG00000070560, ENSDARG00000113907 833.76 6249.99 nucleosome assembly protein 1-like 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9099]
82. nipblb ENSDARG00000061052 833.76 6249.99 nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
83. nme2b.2 ENSDARG00000099420 833.76 6249.99 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
84. notch3 ENSDARG00000052139 833.76 6249.99 notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
85. nup50 ENSDARG00000017454 833.76 6249.99 nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]
86. palld ENSDARG00000040009 833.76 6249.99 palladin, cytoskeletal associated protein [Source:ZFIN;Acc:ZDB-GENE-041014-252]
87. pcdh1gc5 ENSDARG00000104826 833.76 6249.99 protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
88. pcm1 ENSDARG00000062198, ENSDARG00000112178 833.76 6249.99 pericentriolar material 1 [Source:ZFIN;Acc:ZDB-GENE-030131-428]
89. pfkmb ENSDARG00000060797, ENSDARG00000109412, ENSDARG00000109653, ENSDARG00000115422 833.76 6249.99 phosphofructokinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-081114-1]
90. pigk ENSDARG00000024479 833.76 6249.99 phosphatidylinositol glycan anchor biosynthesis, class K [Source:ZFIN;Acc:ZDB-GENE-040625-162]
91. pnrc2 ENSDARG00000053291, ENSDARG00000112537 833.76 6249.99 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
92. ppiaa ENSDARG00000009212 833.76 6249.99 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
93. psma6b ENSDARG00000013966 833.76 6249.99 proteasome subunit alpha 6b [Source:ZFIN;Acc:ZDB-GENE-040718-329]
94. ptrhd1 ENSDARG00000016122 833.76 6249.99 peptidyl-tRNA hydrolase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081110-2]
95. rbms2b ENSDARG00000056150, ENSDARG00000115483 833.76 6249.99 RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
96. rd3 ENSDARG00000031600 833.76 6249.99 retinal degeneration 3, GUCY2D regulator [Source:ZFIN;Acc:ZDB-GENE-040724-103]
97. rpl19 ENSDARG00000013307 833.76 6249.99 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
98. rpl23 ENSDARG00000053457 833.76 6249.99 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
99. rpl24 ENSDARG00000099104 833.76 6249.99 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
100. rpl28 ENSDARG00000005791 833.76 6249.99 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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