Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s3.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3689.47 38333.64 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3101.29 32222.44 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2566.58 26666.80 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2459.64 25555.69 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co1 ENSMUSG00000064351 2245.76 23333.48 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
6. mt-Co2 ENSMUSG00000064354 1764.53 18333.49 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1390.23 14444.51 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Rnr2 ENSMUSG00000064339 1390.23 14444.51 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Hbb-y ENSMUSG00000052187 1069.41 11111.18 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd2 ENSMUSG00000064345 1069.41 11111.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Co3 ENSMUSG00000064358 1015.94 10555.63 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 855.53 8888.97 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Hba-x ENSMUSG00000055609 855.53 8888.97 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
14. Actb ENSMUSG00000029580 641.65 6666.75 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Cfl1 ENSMUSG00000056201 588.18 6111.20 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
16. Gm13340 ENSMUSG00000083563 588.18 6111.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. H19 ENSMUSG00000000031 534.71 5555.64 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. mt-Nd5 ENSMUSG00000064367 534.71 5555.64 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Tuba1b ENSMUSG00000023004 374.29 3888.88 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Chchd2 ENSMUSG00000070493 320.82 3333.32 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
21. Hba-a1 ENSMUSG00000069919 320.82 3333.32 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Nedd4 ENSMUSG00000032216 320.82 3333.32 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Set ENSMUSG00000054766 320.82 3333.32 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Hba-a2 ENSMUSG00000069917 267.35 2777.77 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
25. Hbb-bh1 ENSMUSG00000052217 267.35 2777.77 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
26. Marcksl1 ENSMUSG00000047945 267.35 2777.77 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
27. Mdk ENSMUSG00000027239 267.35 2777.77 midkine [Source:MGI Symbol;Acc:MGI:96949]
28. Pkm ENSMUSG00000032294 267.35 2777.77 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Rpsa ENSMUSG00000032518 267.35 2777.77 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
30. Trp53i11 ENSMUSG00000068735 267.35 2777.77 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
31. Tuba1a ENSMUSG00000072235 267.35 2777.77 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
32. mt-Nd3 ENSMUSG00000064360 267.35 2777.77 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
33. Cdkn1c ENSMUSG00000037664 213.88 2222.22 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
34. Gm10180 ENSMUSG00000066809 213.88 2222.22 predicted gene 10180 [Source:MGI Symbol;Acc:MGI:3701608]
35. Hnrnpa2b1 ENSMUSG00000004980 213.88 2222.22 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
36. Map1b ENSMUSG00000052727 213.88 2222.22 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
37. Npm1 ENSMUSG00000057113 213.88 2222.22 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
38. Paics ENSMUSG00000029247 213.88 2222.22 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
39. Rpl4 ENSMUSG00000032399 213.88 2222.22 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Serbp1 ENSMUSG00000036371 213.88 2222.22 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
41. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 213.88 2222.22 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
42. U2af2 ENSMUSG00000030435 213.88 2222.22 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
43. Ywhae ENSMUSG00000020849 213.88 2222.22 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
44. Alg2 ENSMUSG00000039740 160.41 1666.66 asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase) [Source:MGI Symbol;Acc:MGI:1914731]
45. Atp5c1 ENSMUSG00000025781 160.41 1666.66 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437]
46. Bub3 ENSMUSG00000066979 160.41 1666.66 BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463]
47. Casz1 ENSMUSG00000028977 160.41 1666.66 castor zinc finger 1 [Source:MGI Symbol;Acc:MGI:1196251]
48. Cdca3 ENSMUSG00000023505 160.41 1666.66 cell division cycle associated 3 [Source:MGI Symbol;Acc:MGI:1315198]
49. Cox8a ENSMUSG00000035885 160.41 1666.66 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
50. Eef1g ENSMUSG00000071644 160.41 1666.66 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
51. Gm10275 ENSMUSG00000069682 160.41 1666.66 predicted pseudogene 10275 [Source:MGI Symbol;Acc:MGI:3704354]
52. Gm10800 ENSMUSG00000075014 160.41 1666.66 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
53. Gm17132 ENSMUSG00000061331 160.41 1666.66 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
54. Gm5805 ENSMUSG00000061848 160.41 1666.66 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
55. Gm5963 ENSMUSG00000052192 160.41 1666.66 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
56. Gm9769 160.41 1666.66 predicted pseudogene 9769
57. Grb10 ENSMUSG00000020176 160.41 1666.66 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
58. Hsp90aa1 ENSMUSG00000021270 160.41 1666.66 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Mir296 ENSMUSG00000065521 160.41 1666.66 microRNA 296 [Source:MGI Symbol;Acc:MGI:3619269]
60. Pcbp1 ENSMUSG00000051695 160.41 1666.66 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Phf5a ENSMUSG00000061360 160.41 1666.66 PHD finger protein 5A [Source:MGI Symbol;Acc:MGI:2156864]
62. Prpf40a ENSMUSG00000061136 160.41 1666.66 pre-mRNA processing factor 40A [Source:MGI Symbol;Acc:MGI:1860512]
63. Ran ENSMUSG00000029430 160.41 1666.66 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
64. Rps29 ENSMUSG00000034892 160.41 1666.66 ribosomal protein S29 [Source:MGI Symbol;Acc:MGI:107681]
65. Rps4x ENSMUSG00000031320 160.41 1666.66 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Rrm2 ENSMUSG00000020649 160.41 1666.66 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
67. Rtn3 ENSMUSG00000024758 160.41 1666.66 reticulon 3 [Source:MGI Symbol;Acc:MGI:1339970]
68. Tfg ENSMUSG00000022757 160.41 1666.66 Trk-fused gene [Source:MGI Symbol;Acc:MGI:1338041]
69. Tpm1 ENSMUSG00000032366 160.41 1666.66 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
70. Ttc3 ENSMUSG00000040785 160.41 1666.66 tetratricopeptide repeat domain 3 [Source:MGI Symbol;Acc:MGI:1276539]
71. U2surp ENSMUSG00000032407 160.41 1666.66 U2 snRNP-associated SURP domain containing [Source:MGI Symbol;Acc:MGI:1915208]
72. Ubap2 ENSMUSG00000028433 160.41 1666.66 ubiquitin-associated protein 2 [Source:MGI Symbol;Acc:MGI:1916176]
73. Ubb ENSMUSG00000019505 160.41 1666.66 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
74. Vim ENSMUSG00000026728 160.41 1666.66 vimentin [Source:MGI Symbol;Acc:MGI:98932]
75. Wdr89 ENSMUSG00000045690 160.41 1666.66 WD repeat domain 89 [Source:MGI Symbol;Acc:MGI:1919588]
76. Zmym4 ENSMUSG00000042446 160.41 1666.66 zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
77. Aars ENSMUSG00000031960 106.94 1111.11 alanyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:2384560]
78. Adprh ENSMUSG00000002844 106.94 1111.11 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
79. Anapc2 ENSMUSG00000026965 106.94 1111.11 anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
80. Anp32b ENSMUSG00000028333 106.94 1111.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Arl6ip1 ENSMUSG00000030654 106.94 1111.11 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
82. Atp5b ENSMUSG00000025393 106.94 1111.11 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
83. Atp5e ENSMUSG00000016252 106.94 1111.11 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit [Source:MGI Symbol;Acc:MGI:1855697]
84. Atp5g3 ENSMUSG00000018770 106.94 1111.11 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
85. Banf1 ENSMUSG00000024844 106.94 1111.11 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
86. Bcl9 ENSMUSG00000038256 106.94 1111.11 B cell CLL/lymphoma 9 [Source:MGI Symbol;Acc:MGI:1924828]
87. Bcs1l ENSMUSG00000026172 106.94 1111.11 BCS1-like (yeast) [Source:MGI Symbol;Acc:MGI:1914071]
88. Cacybp ENSMUSG00000014226 106.94 1111.11 calcyclin binding protein [Source:MGI Symbol;Acc:MGI:1270839]
89. Calr ENSMUSG00000003814 106.94 1111.11 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
90. Ccnd2 ENSMUSG00000000184 106.94 1111.11 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
91. Ccnt1 ENSMUSG00000011960 106.94 1111.11 cyclin T1 [Source:MGI Symbol;Acc:MGI:1328363]
92. Cdk4 ENSMUSG00000006728 106.94 1111.11 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
93. Chrna4 ENSMUSG00000027577 106.94 1111.11 cholinergic receptor, nicotinic, alpha polypeptide 4 [Source:MGI Symbol;Acc:MGI:87888]
94. Col4a2 ENSMUSG00000031503 106.94 1111.11 collagen, type IV, alpha 2 [Source:MGI Symbol;Acc:MGI:88455]
95. Cpsf6 ENSMUSG00000055531 106.94 1111.11 cleavage and polyadenylation specific factor 6 [Source:MGI Symbol;Acc:MGI:1913948]
96. Csnk1d ENSMUSG00000025162 106.94 1111.11 casein kinase 1, delta [Source:MGI Symbol;Acc:MGI:1355272]
97. Ctnna1 ENSMUSG00000037815 106.94 1111.11 catenin (cadherin associated protein), alpha 1 [Source:MGI Symbol;Acc:MGI:88274]
98. Ctxn1 ENSMUSG00000048644 106.94 1111.11 cortexin 1 [Source:MGI Symbol;Acc:MGI:88566]
99. Cycs ENSMUSG00000063694 106.94 1111.11 cytochrome c, somatic [Source:MGI Symbol;Acc:MGI:88578]
100. Cyfip1 ENSMUSG00000030447 106.94 1111.11 cytoplasmic FMR1 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1338801]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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