Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s37.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3141.08 25282.43
2. EEF1A EEF1A 1009.63 8126.47
3. RPS8 ENSGALG00000010124 1009.63 8126.47 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
4. MT-CYB MT-CYB 953.54 7675.01
5. RPL26 RPL26 953.54 7675.01
6. RPLP1 ENSGALG00000030878 953.54 7675.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. MT-ATP6 MT-ATP6 897.45 7223.54
8. RPL14 ENSGALG00000043379 785.27 6320.61 ribosomal protein L14
9. RPL27A ENSGALG00000005948 673.09 5417.68 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
10. RPL4 ENSGALG00000007711 673.09 5417.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. TMSB4X ENSGALG00000026383 673.09 5417.68 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
12. ENSGALG00000028992 ENSGALG00000028992 617.00 4966.21
13. RPS3A ENSGALG00000010077 617.00 4966.21 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
14. HMGN5 ENSGALG00000007131 504.82 4063.28 high mobility group nucleosome binding domain 5, transcript variant X1
15. HSPA8 ENSGALG00000006512 504.82 4063.28 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
16. RPL29 ENSGALG00000026978 504.82 4063.28 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
17. RPL8 ENSGALG00000016232 504.82 4063.28 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. RPS21 ENSGALG00000005338 504.82 4063.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. SSR2 ENSGALG00000000764 504.82 4063.28 signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
20. HDAC2 ENSGALG00000014991 448.73 3611.81 histone deacetylase 2 [Source:NCBI gene;Acc:395635]
21. HSPE1 ENSGALG00000009070 448.73 3611.81 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
22. MT-ND6 MT-ND6 448.73 3611.81
23. RPL19 ENSGALG00000001658 448.73 3611.81 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. RPS16 ENSGALG00000026490 448.73 3611.81 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
25. SET ENSGALG00000004701 448.73 3611.81 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
26. ATP6V1G1 ENSGALG00000007190 392.63 3160.26 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
27. CRHOA CRHOA 392.63 3160.26
28. MT-ND4 MT-ND4 392.63 3160.26
29. PHB2 ENSGALG00000014567 392.63 3160.26 prohibitin 2 [Source:NCBI gene;Acc:771124]
30. RPL5 ENSGALG00000005922 392.63 3160.26 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
31. RPS10 ENSGALG00000002813 392.63 3160.26 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
32. RPS13 ENSGALG00000006096 392.63 3160.26 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
33. RPS23 ENSGALG00000015617 392.63 3160.26 ribosomal protein S23
34. RPS24 ENSGALG00000004871 392.63 3160.26 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
35. RPS4 RPS4 392.63 3160.26
36. RPS6 ENSGALG00000015082 392.63 3160.26 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. gga-mir-3533 ENSGALG00000027736 392.63 3160.26 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
38. ATP5C1 336.54 2708.80 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
39. CKAP2 ENSGALG00000017025 336.54 2708.80 cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
40. COX7A2 ENSGALG00000015906 336.54 2708.80 cytochrome c oxidase subunit 7A2 [Source:NCBI gene;Acc:772260]
41. EIF5A2 ENSGALG00000009309 336.54 2708.80 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
42. HBZ ENSGALG00000023740 336.54 2708.80 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
43. MT-ND2 MT-ND2 336.54 2708.80
44. PRDX1 ENSGALG00000010243 336.54 2708.80 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
45. RAN ENSGALG00000002569 336.54 2708.80 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. RPL10A ENSGALG00000002644 336.54 2708.80 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
47. RPL15 ENSGALG00000011290 336.54 2708.80 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
48. RPL21 ENSGALG00000027035 336.54 2708.80 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPL22 ENSGALG00000000719 336.54 2708.80 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
50. RPL23A ENSGALG00000003966 336.54 2708.80 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
51. RPL3 ENSGALG00000012172 336.54 2708.80 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
52. RPL32 ENSGALG00000027142 336.54 2708.80 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPL35A ENSGALG00000007611, ENSGALG00000041230 336.54 2708.80 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
54. RPL37 ENSGALG00000014833 336.54 2708.80 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
55. RPS15A ENSGALG00000006771 336.54 2708.80 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
56. RPS7 ENSGALG00000016392 336.54 2708.80 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. UBB ENSGALG00000004509 336.54 2708.80 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
58. AGGF1 ENSGALG00000004311 280.45 2257.33 angiogenic factor with G-patch and FHA domains 1, transcript variant X1
59. ATP5G3 280.45 2257.33 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
60. ATP6V0C ENSGALG00000009229 280.45 2257.33 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
61. BRD1 ENSGALG00000029379 280.45 2257.33 bromodomain containing 1 [Source:NCBI gene;Acc:417731]
62. BZW2 ENSGALG00000010809 280.45 2257.33 basic leucine zipper and W2 domains 2 [Source:NCBI gene;Acc:420594]
63. CASP8AP2 ENSGALG00000015611 280.45 2257.33 caspase 8 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1510]
64. CCT4 ENSGALG00000008812 280.45 2257.33 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
65. COL5A2 ENSGALG00000031112 280.45 2257.33 collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210]
66. COX5A ENSGALG00000014121 280.45 2257.33 cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
67. FTH FTH 280.45 2257.33
68. HAPLN1 ENSGALG00000015627 280.45 2257.33 hyaluronan and proteoglycan link protein 1 [Source:NCBI gene;Acc:396475]
69. HSP90AA1 ENSGALG00000033212 280.45 2257.33 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
70. IGF2BP3 ENSGALG00000010961 280.45 2257.33 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
71. KMT2C 280.45 2257.33 lysine methyltransferase 2C, transcript variant X14
72. MGA 280.45 2257.33 MGA, MAX dimerization protein, transcript variant X15
73. MSI1 ENSGALG00000007227 280.45 2257.33 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
74. MT-ND5 MT-ND5 280.45 2257.33
75. NARS ENSGALG00000040506 280.45 2257.33 asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
76. PPIA ENSGALG00000028600 280.45 2257.33 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
77. PPIB ENSGALG00000002210 280.45 2257.33 peptidylprolyl isomerase B (cyclophilin B) [Source:NCBI gene;Acc:396447]
78. RPL13 ENSGALG00000006179 280.45 2257.33 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
79. RPL38 ENSGALG00000001465 280.45 2257.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
80. RPL6 ENSGALG00000004818 280.45 2257.33 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
81. RPL7 ENSGALG00000035252 280.45 2257.33 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. RPL7A ENSGALG00000003197 280.45 2257.33 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
83. RPS25 ENSGALG00000007699 280.45 2257.33 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
84. SFPQ ENSGALG00000002514 280.45 2257.33 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
85. SLC35B1 ENSGALG00000035057 280.45 2257.33 solute carrier family 35 member B1 [Source:NCBI gene;Acc:395185]
86. STMN1 ENSGALG00000001475 280.45 2257.33 stathmin 1 [Source:NCBI gene;Acc:396057]
87. SUB1 ENSGALG00000003248 280.45 2257.33 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
88. TMED7 ENSGALG00000028484 280.45 2257.33 Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
89. TMEM128 ENSGALG00000014992 280.45 2257.33 transmembrane protein 128 [Source:NCBI gene;Acc:422845]
90. TXN ENSGALG00000015704 280.45 2257.33 thioredoxin [Source:NCBI gene;Acc:396437]
91. UQCR11 ENSGALG00000001096 280.45 2257.33 ubiquinol-cytochrome c reductase, complex III subunit XI [Source:NCBI gene;Acc:770135]
92. ZFR ENSGALG00000003235 280.45 2257.33 zinc finger RNA binding protein, transcript variant X3
93. ABRACL ENSGALG00000013826 224.36 1805.87 ABRA C-terminal like [Source:NCBI gene;Acc:770205]
94. ARHGAP21 ENSGALG00000007721 224.36 1805.87 Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
95. ARPC5L ENSGALG00000001014 224.36 1805.87 actin related protein 2/3 complex subunit 5 like [Source:HGNC Symbol;Acc:HGNC:23366]
96. BRT-1 BRT-1 224.36 1805.87
97. CALM CALM 224.36 1805.87
98. CCT8 ENSGALG00000015821 224.36 1805.87 chaperonin containing TCP1 subunit 8 [Source:NCBI gene;Acc:418486]
99. COX4I1 224.36 1805.87 cytochrome c oxidase subunit 4I1, transcript variant X1
100. CRYM ENSGALG00000002484 224.36 1805.87 crystallin mu [Source:HGNC Symbol;Acc:HGNC:2418]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA