Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s60.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 7573.89 60961.64
2. MT-CO3 MT-CO3 7282.59 58616.98
3. MT-ND5 MT-ND5 3495.64 28136.13
4. MT-ND4 MT-ND4 3204.34 25791.48
5. MT-CYB MT-CYB 2767.38 22274.42
6. gga-mir-3527 gga-mir-3527 2184.78 17585.12
7. MT-ND3 MT-ND3 2039.12 16412.71
8. MT-ND1 MT-ND1 1602.17 12895.74
9. EEF1A EEF1A 1310.87 10551.09
10. MT-CO1 MT-CO1 1310.87 10551.09
11. GAPDH ENSGALG00000014442 873.91 7034.03 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 873.91 7034.03 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. SLC25A6_1 ENSGALG00000016691 873.91 7034.03 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
14. MT-ND2 MT-ND2 728.26 5861.71
15. RAN ENSGALG00000002569 728.26 5861.71 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
16. RPL5 ENSGALG00000005922 728.26 5861.71 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. TPT1 ENSGALG00000028872 728.26 5861.71 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
18. ANP32B ENSGALG00000037483 582.61 4689.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
19. ATP6V0C ENSGALG00000009229 582.61 4689.38 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
20. CIRBP ENSGALG00000030918 582.61 4689.38 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
21. MDK ENSGALG00000008367 582.61 4689.38 midkine [Source:NCBI gene;Acc:423196]
22. RPL13 ENSGALG00000006179 582.61 4689.38 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. RPL27A ENSGALG00000005948 582.61 4689.38 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL31 ENSGALG00000016775 582.61 4689.38 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
25. RPL7A ENSGALG00000003197 582.61 4689.38 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPL8 ENSGALG00000016232 582.61 4689.38 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPLP0 ENSGALG00000023294 582.61 4689.38 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
28. UBR7 ENSGALG00000010842 582.61 4689.38 Gallus gallus ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001318461]
29. CDC23 ENSGALG00000007610 436.96 3517.06 cell division cycle 23 [Source:HGNC Symbol;Acc:HGNC:1724]
30. DAPK3 ENSGALG00000037733 436.96 3517.06 death-associated protein kinase 3, transcript variant X2
31. EIF4EBP1 ENSGALG00000003205 436.96 3517.06 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
32. EIF4G2 ENSGALG00000005587 436.96 3517.06 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. ENO1 ENSGALG00000002377 436.96 3517.06 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
34. HNRNPA3 ENSGALG00000009250 436.96 3517.06 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
35. MT-ND6 MT-ND6 436.96 3517.06
36. PKM ENSGALG00000001992 436.96 3517.06 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
37. RPL14 ENSGALG00000043379 436.96 3517.06 ribosomal protein L14
38. RPL15 ENSGALG00000011290 436.96 3517.06 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
39. RPL23 ENSGALG00000001634 436.96 3517.06 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
40. RPL23A ENSGALG00000003966 436.96 3517.06 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
41. RPL32 ENSGALG00000027142 436.96 3517.06 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
42. RPL35A ENSGALG00000007611, ENSGALG00000041230 436.96 3517.06 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
43. RPL6 ENSGALG00000004818 436.96 3517.06 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
44. RPS12 ENSGALG00000013990 436.96 3517.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. RPS20 ENSGALG00000014432 436.96 3517.06 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
46. RPS24 ENSGALG00000004871 436.96 3517.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
47. RPS27A ENSGALG00000036790 436.96 3517.06 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPS3 ENSGALG00000017330 436.96 3517.06 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
49. SIGMAR1 ENSGALG00000028996 436.96 3517.06 sigma non-opioid intracellular receptor 1 [Source:NCBI gene;Acc:100859748]
50. SNRPG ENSGALG00000028409 436.96 3517.06 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. UBR2 ENSGALG00000009906 436.96 3517.06 ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:HGNC:21289]
52. gga-mir-3533 ENSGALG00000027736 436.96 3517.06 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
53. ACTL6A ENSGALG00000009061 291.30 2344.65 actin like 6A [Source:HGNC Symbol;Acc:HGNC:24124]
54. AP3S1 ENSGALG00000002341 291.30 2344.65 adaptor related protein complex 3 sigma 1 subunit [Source:NCBI gene;Acc:427389]
55. ARF4 ENSGALG00000005622 291.30 2344.65 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
56. ARHGDIB ENSGALG00000011738 291.30 2344.65 Rho GDP dissociation inhibitor beta [Source:NCBI gene;Acc:417941]
57. ATP5G3 291.30 2344.65 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. BUB3 ENSGALG00000009681 291.30 2344.65 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
59. C6H10ORF32 C6H10ORF32 291.30 2344.65
60. CADM1 ENSGALG00000014582 291.30 2344.65 cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]
61. CCT6 CCT6 291.30 2344.65
62. CDC42SE1 ENSGALG00000028119 291.30 2344.65 CDC42 small effector 1 [Source:HGNC Symbol;Acc:HGNC:17719]
63. COMMD2 ENSGALG00000028001 291.30 2344.65 COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]
64. CSNK2A1 ENSGALG00000006197 291.30 2344.65 casein kinase 2 alpha 1 [Source:NCBI gene;Acc:432370]
65. DKC1 ENSGALG00000005054 291.30 2344.65 dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
66. DYL1 ENSGALG00000007153 291.30 2344.65 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
67. EEF1B2 ENSGALG00000008590 291.30 2344.65 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
68. EIF3B ENSGALG00000040999 291.30 2344.65 eukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]
69. EIF3F ENSGALG00000005326 291.30 2344.65 eukaryotic translation initiation factor 3 subunit F
70. ENSGALG00000028992 ENSGALG00000028992 291.30 2344.65
71. EXOC3 ENSGALG00000013397 291.30 2344.65 exocyst complex component 3 [Source:NCBI gene;Acc:420987]
72. GNB2L1 ENSGALG00000000122 291.30 2344.65 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
73. H2AFZ ENSGALG00000014023 291.30 2344.65 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
74. HMGB2 ENSGALG00000010745 291.30 2344.65 high mobility group box 2 [Source:NCBI gene;Acc:396482]
75. HMGN2 HMGN2 291.30 2344.65
76. ITGB1BP3 ENSGALG00000030120 291.30 2344.65 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
77. ITM2A ENSGALG00000004107 291.30 2344.65 integral membrane protein 2A [Source:NCBI gene;Acc:422145]
78. KIAA1191 ENSGALG00000003370 291.30 2344.65 KIAA1191 [Source:NCBI gene;Acc:416230]
79. LATS1 ENSGALG00000012386 291.30 2344.65 large tumor suppressor kinase 1 [Source:HGNC Symbol;Acc:HGNC:6514]
80. LIN28B ENSGALG00000026761 291.30 2344.65 lin-28 homolog B [Source:NCBI gene;Acc:421786]
81. LOC769139 ENSGALG00000026754 291.30 2344.65 feather keratin 1-like, transcript variant X2
82. MED30 ENSGALG00000030862 291.30 2344.65 mediator complex subunit 30 [Source:NCBI gene;Acc:420284]
83. NDUFA11 ENSGALG00000021692 291.30 2344.65 NADH:ubiquinone oxidoreductase subunit A11
84. NDUFA8 ENSGALG00000040987 291.30 2344.65 NADH:ubiquinone oxidoreductase subunit A8 [Source:NCBI gene;Acc:417112]
85. NDUFAB1 ENSGALG00000006073 291.30 2344.65 NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
86. NDUFB9 ENSGALG00000042242 291.30 2344.65 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
87. NDUFS4 ENSGALG00000028026 291.30 2344.65 NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
88. NPHP3 ENSGALG00000034586 291.30 2344.65 nephrocystin 3, transcript variant X1
89. NR2F1 ENSGALG00000027907 291.30 2344.65 nuclear receptor subfamily 2 group F member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
90. OCIAD1 ENSGALG00000014081 291.30 2344.65 OCIA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16074]
91. PPP1R2 ENSGALG00000029789 291.30 2344.65 protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
92. PRPF8 ENSGALG00000002943 291.30 2344.65 pre-mRNA processing factor 8 [Source:HGNC Symbol;Acc:HGNC:17340]
93. PSMC1 ENSGALG00000010675 291.30 2344.65 proteasome 26S subunit, ATPase 1 [Source:NCBI gene;Acc:395804]
94. PYGB ENSGALG00000008508 291.30 2344.65 glycogen phosphorylase B [Source:NCBI gene;Acc:421248]
95. RAB35 ENSGALG00000007308 291.30 2344.65 RAB35, member RAS oncogene family [Source:NCBI gene;Acc:416983]
96. RBBP4 ENSGALG00000003522 291.30 2344.65 RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
97. RBMX ENSGALG00000006457 291.30 2344.65 RNA binding motif protein X-linked [Source:NCBI gene;Acc:422248]
98. RPL10A ENSGALG00000002644 291.30 2344.65 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
99. RPL27 ENSGALG00000002837 291.30 2344.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
100. RPL3 ENSGALG00000012172 291.30 2344.65 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA