Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s48.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBE 7547.35 60747.85 hemoglobin subunit epsilon
2. HBG1 HBG1 5225.09 42056.21
3. MT-ND4 MT-ND4 4354.24 35046.83
4. MT-ATP6 MT-ATP6 4063.96 32710.40
5. MT-CO3 MT-CO3 3773.67 30373.88
6. MT-CYB MT-CYB 2612.54 21028.07
7. HBZ ENSGALG00000023740 2322.26 18691.63 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
8. GAPDH ENSGALG00000014442 2031.98 16355.20 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND1 MT-ND1 2031.98 16355.20
10. MT-ND5 MT-ND5 2031.98 16355.20
11. RPL18A 1741.70 14018.76 ribosomal protein L18a
12. gga-mir-3527 gga-mir-3527 1741.70 14018.76
13. RPL27A ENSGALG00000005948 1451.41 11682.25 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
14. MT-CO1 MT-CO1 1161.13 9345.82
15. MT-ND3 MT-ND3 1161.13 9345.82
16. RPL15 ENSGALG00000011290 1161.13 9345.82 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPL5 ENSGALG00000005922 1161.13 9345.82 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. YTHDF2 ENSGALG00000034831 1161.13 9345.82 YTH N6-methyladenosine RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:31675]
19. gga-mir-3533 ENSGALG00000027736 1161.13 9345.82 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
20. ANP32B ENSGALG00000037483 870.85 7009.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
21. COMMD8 ENSGALG00000026279 870.85 7009.38 COMM domain containing 8 [Source:NCBI gene;Acc:422769]
22. EEF1A EEF1A 870.85 7009.38
23. ENO1 ENSGALG00000002377 870.85 7009.38 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. MT-ND2 MT-ND2 870.85 7009.38
25. RAN ENSGALG00000002569 870.85 7009.38 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
26. RERE ENSGALG00000002232 870.85 7009.38 arginine-glutamic acid dipeptide repeats [Source:HGNC Symbol;Acc:HGNC:9965]
27. RPL24 ENSGALG00000015339 870.85 7009.38 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
28. RPL26 RPL26 870.85 7009.38
29. RPL8 ENSGALG00000016232 870.85 7009.38 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
30. RPS29 ENSGALG00000012229 870.85 7009.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. ATF4 ENSGALG00000012135 580.57 4672.95 activating transcription factor 4 [Source:NCBI gene;Acc:395693]
32. CUL3 ENSGALG00000005108 580.57 4672.95 cullin 3 [Source:HGNC Symbol;Acc:HGNC:2553]
33. EEF1E1 ENSGALG00000012781 580.57 4672.95 eukaryotic translation elongation factor 1 epsilon 1
34. EIF3M ENSGALG00000012109 580.57 4672.95 eukaryotic translation initiation factor 3 subunit M [Source:NCBI gene;Acc:421602]
35. FTH FTH 580.57 4672.95
36. H3-IX_1 H3-IX_1 580.57 4672.95
37. HRAS1 HRAS1 580.57 4672.95
38. HSPA8 ENSGALG00000006512 580.57 4672.95 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
39. HSPD1 ENSGALG00000008094 580.57 4672.95 heat shock protein family D (Hsp60) member 1 [Source:NCBI gene;Acc:424059]
40. KIF21A ENSGALG00000007098 580.57 4672.95 kinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]
41. LAP3 ENSGALG00000006334 580.57 4672.95 leucine aminopeptidase 3 [Source:NCBI gene;Acc:425306]
42. NDUFA9 ENSGALG00000017282 580.57 4672.95 NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
43. PPIA ENSGALG00000028600 580.57 4672.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
44. PRELP ENSGALG00000034456 580.57 4672.95 proline and arginine rich end leucine rich repeat protein [Source:HGNC Symbol;Acc:HGNC:9357]
45. RPL29 ENSGALG00000026978 580.57 4672.95 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
46. RPL32 ENSGALG00000027142 580.57 4672.95 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
47. RPL35 ENSGALG00000035677 580.57 4672.95 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
48. RPL7A ENSGALG00000003197 580.57 4672.95 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
49. SLC25A6 ENSGALG00000016691 580.57 4672.95 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
50. SNRPG ENSGALG00000028409 580.57 4672.95 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. SS18 ENSGALG00000015119 580.57 4672.95 SS18, nBAF chromatin remodeling complex subunit [Source:NCBI gene;Acc:421085]
52. TCF12 ENSGALG00000004304 580.57 4672.95 transcription factor 12 [Source:NCBI gene;Acc:396334]
53. VAMP7 ENSGALG00000007476 580.57 4672.95 vesicle associated membrane protein 7 [Source:NCBI gene;Acc:422297]
54. ADAT1 ENSGALG00000000908 290.28 2336.43 adenosine deaminase, tRNA specific 1 [Source:NCBI gene;Acc:415886]
55. AIF1L ENSGALG00000029834 290.28 2336.43 allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
56. ALDH1A2 ENSGALG00000004270 290.28 2336.43 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
57. AP5M1 ENSGALG00000012101 290.28 2336.43 adaptor related protein complex 5 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:20192]
58. ARPC3 ENSGALG00000003820 290.28 2336.43 actin related protein 2/3 complex subunit 3 [Source:NCBI gene;Acc:416837]
59. ASAH1 ENSGALG00000026364 290.28 2336.43 N-acylsphingosine amidohydrolase (acid ceramidase) 1 [Source:NCBI gene;Acc:422727]
60. ATG3 ENSGALG00000015204 290.28 2336.43 autophagy related 3 [Source:NCBI gene;Acc:418369]
61. ATP5C1 290.28 2336.43 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
62. ATP6V0B ENSGALG00000010091 290.28 2336.43 ATPase H+ transporting V0 subunit b [Source:NCBI gene;Acc:424575]
63. ATP6V1C1 ENSGALG00000034099 290.28 2336.43 ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]
64. ATP6V1D ENSGALG00000009570 290.28 2336.43 ATPase H+ transporting V1 subunit D [Source:NCBI gene;Acc:423280]
65. ATP6V1G1 ENSGALG00000007190 290.28 2336.43 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
66. BCAR1 ENSGALG00000042895 290.28 2336.43 BCAR1, Cas family scaffold protein [Source:HGNC Symbol;Acc:HGNC:971]
67. BMI1 ENSGALG00000041267 290.28 2336.43 BMI1 proto-oncogene, polycomb ring finger [Source:NCBI gene;Acc:493647]
68. BRP44L BRP44L 290.28 2336.43
69. BTBD1 ENSGALG00000006020 290.28 2336.43 BTB domain containing 1 [Source:NCBI gene;Acc:415461]
70. C14orf1 C14orf1 290.28 2336.43
71. C15H12ORF49 C15H12ORF49 290.28 2336.43
72. C2orf47 C2orf47 290.28 2336.43
73. C4H4ORF52 C4H4ORF52 290.28 2336.43
74. CALM_1 CALM_1 290.28 2336.43
75. CHERP ENSGALG00000003824 290.28 2336.43 calcium homeostasis endoplasmic reticulum protein [Source:NCBI gene;Acc:420144]
76. CHST14 ENSGALG00000026531 290.28 2336.43 carbohydrate sulfotransferase 14
77. CIRBP ENSGALG00000030918 290.28 2336.43 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
78. CNN3 ENSGALG00000005597 290.28 2336.43 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
79. COMMD10 ENSGALG00000002308 290.28 2336.43 COMM domain containing 10 [Source:NCBI gene;Acc:427388]
80. COMMD2 ENSGALG00000028001 290.28 2336.43 COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]
81. COMT ENSGALG00000002024 290.28 2336.43 catechol-O-methyltransferase [Source:HGNC Symbol;Acc:HGNC:2228]
82. COX5A ENSGALG00000014121 290.28 2336.43 cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
83. COX7B ENSGALG00000007863 290.28 2336.43 cytochrome c oxidase subunit 7B [Source:NCBI gene;Acc:771947]
84. COX7C ENSGALG00000027963 290.28 2336.43 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
85. CREG1 ENSGALG00000040426 290.28 2336.43 cellular repressor of E1A stimulated genes 1 [Source:NCBI gene;Acc:768680]
86. CTBP1 ENSGALG00000039942 290.28 2336.43 C-terminal binding protein 1 [Source:NCBI gene;Acc:422904]
87. CYC CYC 290.28 2336.43
88. DACT1 ENSGALG00000012023 290.28 2336.43 dishevelled binding antagonist of beta catenin 1 [Source:NCBI gene;Acc:723789]
89. DCAF4 ENSGALG00000009345 290.28 2336.43 DDB1 and CUL4 associated factor 4
90. DDX27 ENSGALG00000006974 290.28 2336.43 DEAD-box helicase 27 [Source:NCBI gene;Acc:419308]
91. DDX3X ENSGALG00000016231 290.28 2336.43 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
92. DDX46 ENSGALG00000006404 290.28 2336.43 DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
93. DDX54 ENSGALG00000007490 290.28 2336.43 DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]
94. DHCR7 ENSGALG00000004106 290.28 2336.43 7-dehydrocholesterol reductase [Source:NCBI gene;Acc:422982]
95. DHX15 ENSGALG00000014395 290.28 2336.43 DEAH-box helicase 15 [Source:NCBI gene;Acc:422813]
96. DHX36 ENSGALG00000043082 290.28 2336.43 DEAH-box helicase 36 [Source:HGNC Symbol;Acc:HGNC:14410]
97. DRG1 ENSGALG00000006921 290.28 2336.43 developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
98. EHD3 ENSGALG00000009086 290.28 2336.43 EH domain containing 3 [Source:NCBI gene;Acc:421306]
99. EI24 ENSGALG00000038097 290.28 2336.43 EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
100. EIF5A2 ENSGALG00000009309 290.28 2336.43 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA