Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s42.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6478.82 52147.07
2. MT-CO3 MT-CO3 5716.61 46012.16
3. gga-mir-3527 gga-mir-3527 5335.50 42944.66
4. MT-ND4 MT-ND4 3811.07 30674.74
5. MT-CO1 MT-CO1 3048.86 24539.83
6. MT-CYB MT-CYB 3048.86 24539.83
7. GAPDH ENSGALG00000014442 2286.64 18404.83 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-ND1 MT-ND1 2286.64 18404.83
9. MT-ND5 MT-ND5 1905.54 15337.41
10. HSPE1 ENSGALG00000009070 1524.43 12269.91 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
11. MT-ND3 MT-ND3 1524.43 12269.91
12. EEF1A EEF1A 1143.32 9202.41
13. ENSGALG00000018384 ENSGALG00000018384 1143.32 9202.41
14. PPP1R7 ENSGALG00000031766 1143.32 9202.41 protein phosphatase 1 regulatory subunit 7 [Source:NCBI gene;Acc:424844]
15. RPL18A 1143.32 9202.41 ribosomal protein L18a
16. RPS15 ENSGALG00000015195 1143.32 9202.41 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
17. TMSB4X ENSGALG00000026383 1143.32 9202.41 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. gga-mir-3533 ENSGALG00000027736 1143.32 9202.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
19. ATP5G3 762.21 6134.92 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
20. DHX15 ENSGALG00000014395 762.21 6134.92 DEAH-box helicase 15 [Source:NCBI gene;Acc:422813]
21. H3-IX H3-IX 762.21 6134.92
22. HNRNPA3 ENSGALG00000009250 762.21 6134.92 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
23. HSP90AB1 ENSGALG00000010175 762.21 6134.92 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
24. HSPA8 ENSGALG00000006512 762.21 6134.92 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
25. PDIA6 ENSGALG00000016447 762.21 6134.92 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
26. PPIA ENSGALG00000028600 762.21 6134.92 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
27. PPP4R2 ENSGALG00000007810 762.21 6134.92 protein phosphatase 4 regulatory subunit 2 [Source:NCBI gene;Acc:416098]
28. PSMD3 ENSGALG00000033162 762.21 6134.92 proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
29. RBM5 762.21 6134.92 RNA binding motif protein 5, transcript variant X1
30. RPL14 ENSGALG00000043379 762.21 6134.92 ribosomal protein L14
31. RPL21 ENSGALG00000027035 762.21 6134.92 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
32. RPL27A ENSGALG00000005948 762.21 6134.92 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL31 ENSGALG00000016775 762.21 6134.92 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. RPL35 ENSGALG00000035677 762.21 6134.92 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
35. RPL7A ENSGALG00000003197 762.21 6134.92 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS23 ENSGALG00000015617 762.21 6134.92 ribosomal protein S23
37. RPS3 ENSGALG00000017330 762.21 6134.92 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
38. SSU72 ENSGALG00000001489 762.21 6134.92 SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:419410]
39. TPT1 ENSGALG00000028872 762.21 6134.92 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
40. TXN ENSGALG00000015704 762.21 6134.92 thioredoxin [Source:NCBI gene;Acc:396437]
41. ABCF2 ENSGALG00000034573 381.11 3067.50 ATP binding cassette subfamily F member 2 [Source:NCBI gene;Acc:426038]
42. AKAP1 ENSGALG00000005575 381.11 3067.50 A-kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:367]
43. ALG6 ENSGALG00000010991 381.11 3067.50 ALG6, alpha-1,3-glucosyltransferase [Source:NCBI gene;Acc:395078]
44. ANGPTL2 ENSGALG00000000927 381.11 3067.50 angiopoietin-like 2 [Source:NCBI gene;Acc:776031]
45. AP5M1 ENSGALG00000012101 381.11 3067.50 adaptor related protein complex 5 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:20192]
46. API5 ENSGALG00000037968 381.11 3067.50 apoptosis inhibitor 5 [Source:NCBI gene;Acc:423168]
47. ARF4 ENSGALG00000005622 381.11 3067.50 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
48. ARF6 ENSGALG00000026944 381.11 3067.50 ADP ribosylation factor 6 [Source:NCBI gene;Acc:428927]
49. ARID3C ENSGALG00000005839 381.11 3067.50 AT-rich interaction domain 3C [Source:HGNC Symbol;Acc:HGNC:21209]
50. ARL5B ENSGALG00000008557 381.11 3067.50 ADP ribosylation factor like GTPase 5B [Source:NCBI gene;Acc:420513]
51. ATP6V0C ENSGALG00000009229 381.11 3067.50 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
52. BOD1L1 ENSGALG00000026470 381.11 3067.50 biorientation of chromosomes in cell division 1 like 1 [Source:HGNC Symbol;Acc:HGNC:31792]
53. C1H11ORF67 C1H11ORF67 381.11 3067.50
54. C5ORF13 C5ORF13 381.11 3067.50
55. CALM CALM 381.11 3067.50
56. CDC42SE2 ENSGALG00000027258 381.11 3067.50 CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
57. CDH1 ENSGALG00000000608 381.11 3067.50 cadherin 3 [Source:NCBI gene;Acc:414845]
58. CHCHD3 ENSGALG00000006489 381.11 3067.50 coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21906]
59. CHST14 ENSGALG00000026531 381.11 3067.50 carbohydrate sulfotransferase 14
60. CIRBP ENSGALG00000030918 381.11 3067.50 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
61. CNOT7 ENSGALG00000013649 381.11 3067.50 CCR4-NOT transcription complex subunit 7 [Source:NCBI gene;Acc:422733]
62. COL1A2 ENSGALG00000009641 381.11 3067.50 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
63. COX4I1 381.11 3067.50 cytochrome c oxidase subunit 4I1, transcript variant X1
64. COX6A1 ENSGALG00000007205 381.11 3067.50 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
65. COX6C ENSGALG00000035996 381.11 3067.50 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
66. COX7B ENSGALG00000007863 381.11 3067.50 cytochrome c oxidase subunit 7B [Source:NCBI gene;Acc:771947]
67. COX7C ENSGALG00000027963 381.11 3067.50 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
68. CRHOB CRHOB 381.11 3067.50
69. CYFIP1 ENSGALG00000016736 381.11 3067.50 cytoplasmic FMR1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13759]
70. DDOST ENSGALG00000010073 381.11 3067.50 dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [Source:NCBI gene;Acc:425542]
71. DGCR2 ENSGALG00000005891 381.11 3067.50 DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
72. DSP ENSGALG00000012790 381.11 3067.50 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
73. DYNLT1 ENSGALG00000019979 381.11 3067.50 dynein light chain Tctex-type 1 [Source:HGNC Symbol;Acc:HGNC:11697]
74. EEF1B2 ENSGALG00000008590 381.11 3067.50 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
75. EIF1 ENSGALG00000028517 381.11 3067.50 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
76. EIF1B ENSGALG00000038646 381.11 3067.50 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
77. EIF4A3 ENSGALG00000008530 381.11 3067.50 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
78. EIF4E2 ENSGALG00000007919 381.11 3067.50 eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:HGNC:3293]
79. EIF4G2 ENSGALG00000005587 381.11 3067.50 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
80. EIF5 ENSGALG00000011464 381.11 3067.50 eukaryotic translation initiation factor 5 [Source:NCBI gene;Acc:423479]
81. EMC2 ENSGALG00000040325 381.11 3067.50 ER membrane protein complex subunit 2 [Source:NCBI gene;Acc:420273]
82. EMC6 ENSGALG00000026492 381.11 3067.50 ER membrane protein complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:28430]
83. ENO1 ENSGALG00000002377 381.11 3067.50 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
84. ENSGALG00000012158 ENSGALG00000012158 381.11 3067.50
85. ENSGALG00000018386 ENSGALG00000018386 381.11 3067.50
86. ENSGALG00000028649 ENSGALG00000028649 381.11 3067.50
87. ENSGALG00000028992 ENSGALG00000028992 381.11 3067.50
88. EPRS ENSGALG00000009598 381.11 3067.50 glutamyl-prolyl-tRNA synthetase [Source:NCBI gene;Acc:421348]
89. ETFDH ENSGALG00000009442 381.11 3067.50 electron transfer flavoprotein dehydrogenase [Source:NCBI gene;Acc:428724]
90. EVC ENSGALG00000015037 381.11 3067.50 EvC ciliary complex subunit 1 [Source:NCBI gene;Acc:422851]
91. FKBP4 ENSGALG00000014331 381.11 3067.50 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
92. GAB1 ENSGALG00000009898 381.11 3067.50 GRB2 associated binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4066]
93. GLMN ENSGALG00000005959 381.11 3067.50 glomulin, FKBP associated protein [Source:HGNC Symbol;Acc:HGNC:14373]
94. GNB2L1 ENSGALG00000000122 381.11 3067.50 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
95. HADHA ENSGALG00000016536 381.11 3067.50 hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha [Source:NCBI gene;Acc:395929]
96. HMGN1 ENSGALG00000016067 381.11 3067.50 high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
97. HMGN2 HMGN2 381.11 3067.50
98. HNRNPAB ENSGALG00000014381 381.11 3067.50 heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
99. HNRNPDL ENSGALG00000023199 381.11 3067.50 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
100. HOXD8 ENSGALG00000037272 381.11 3067.50 homeobox D8 [Source:NCBI gene;Acc:396301]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA