Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s41.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5819.84 46842.92
2. MT-ATP6 MT-ATP6 4807.69 38696.30
3. MT-ND5 MT-ND5 3795.55 30549.75
4. MT-ND4 MT-ND4 3036.44 24439.80
5. MT-CO1 MT-CO1 2530.36 20366.45
6. gga-mir-3527 gga-mir-3527 2277.33 18329.85
7. MT-CYB MT-CYB 2024.29 16293.17
8. CIRBP ENSGALG00000030918 1518.22 12219.90 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
9. COX6A1 ENSGALG00000007205 1265.18 10183.22 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
10. EEF1A EEF1A 1265.18 10183.22
11. RPS15 ENSGALG00000015195 1265.18 10183.22 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
12. DDX5 ENSGALG00000003532 1012.15 8146.63 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
13. EIF4G2 ENSGALG00000005587 1012.15 8146.63 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
14. ENO1 ENSGALG00000002377 1012.15 8146.63 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
15. MT-ND1 MT-ND1 1012.15 8146.63
16. MT-ND3 MT-ND3 1012.15 8146.63
17. TMSB4X ENSGALG00000026383 1012.15 8146.63 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. DDX27 ENSGALG00000006974 759.11 6109.95 DEAD-box helicase 27 [Source:NCBI gene;Acc:419308]
19. GAPDH ENSGALG00000014442 759.11 6109.95 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. HMGB2 ENSGALG00000010745 759.11 6109.95 high mobility group box 2 [Source:NCBI gene;Acc:396482]
21. PPIA ENSGALG00000028600 759.11 6109.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. PTK2 ENSGALG00000031741 759.11 6109.95 protein tyrosine kinase 2 [Source:NCBI gene;Acc:396416]
23. RAN ENSGALG00000002569 759.11 6109.95 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
24. RPL23 ENSGALG00000001634 759.11 6109.95 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL26 RPL26 759.11 6109.95
26. RPS2 ENSGALG00000005490 759.11 6109.95 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
27. RPS27A ENSGALG00000036790 759.11 6109.95 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
28. YWHAZ ENSGALG00000031387 759.11 6109.95 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
29. gga-mir-3533 ENSGALG00000027736 759.11 6109.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
30. ACTR3 ENSGALG00000012159 506.07 4073.27 ARP3 actin related protein 3 homolog [Source:NCBI gene;Acc:374197]
31. AN1ZNF5L ENSGALG00000014589 506.07 4073.27 AN1-type zinc finger protein 5-like, transcript variant X2
32. ATOX1 ENSGALG00000004176 506.07 4073.27 antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
33. ATP5F1 506.07 4073.27 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
34. ATP6V0C ENSGALG00000009229 506.07 4073.27 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. BUB3 ENSGALG00000009681 506.07 4073.27 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
36. C5H11ORF58 C5H11ORF58 506.07 4073.27
37. CLNS1A ENSGALG00000008574 506.07 4073.27 chloride nucleotide-sensitive channel 1A [Source:HGNC Symbol;Acc:HGNC:2080]
38. CRADD ENSGALG00000011297 506.07 4073.27 CASP2 and RIPK1 domain containing adaptor with death domain [Source:NCBI gene;Acc:417900]
39. DDOST ENSGALG00000010073 506.07 4073.27 dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [Source:NCBI gene;Acc:425542]
40. DKC1 ENSGALG00000005054 506.07 4073.27 dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
41. DSP ENSGALG00000012790 506.07 4073.27 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
42. EHMT1 ENSGALG00000033678 506.07 4073.27 euchromatic histone lysine methyltransferase 1 [Source:NCBI gene;Acc:417250]
43. EIF5A2 ENSGALG00000009309 506.07 4073.27 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
44. ENSGALG00000018384 ENSGALG00000018384 506.07 4073.27
45. EXOSC3 ENSGALG00000002426 506.07 4073.27 exosome component 3 [Source:NCBI gene;Acc:423626]
46. FAM168B ENSGALG00000002172 506.07 4073.27 family with sequence similarity 168 member B [Source:HGNC Symbol;Acc:HGNC:27016]
47. FKBP25 FKBP25 506.07 4073.27
48. GLI3 ENSGALG00000040266 506.07 4073.27 GLI family zinc finger 3 [Source:NCBI gene;Acc:420769]
49. HEXA ENSGALG00000043828 506.07 4073.27 hexosaminidase subunit alpha [Source:NCBI gene;Acc:415320]
50. KRT19 ENSGALG00000019719 506.07 4073.27 keratin 19 [Source:NCBI gene;Acc:395861]
51. MED1 ENSGALG00000001708 506.07 4073.27 mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
52. MT-ND2 MT-ND2 506.07 4073.27
53. NAA15 ENSGALG00000009782 506.07 4073.27 N(alpha)-acetyltransferase 15, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:30782]
54. NEK1 ENSGALG00000009683 506.07 4073.27 NIMA related kinase 1 [Source:HGNC Symbol;Acc:HGNC:7744]
55. PDE4B ENSGALG00000011094 506.07 4073.27 phosphodiesterase 4B [Source:NCBI gene;Acc:424700]
56. POLR2D ENSGALG00000002057 506.07 4073.27 RNA polymerase II subunit D [Source:NCBI gene;Acc:424754]
57. PUM2 ENSGALG00000016481 506.07 4073.27 pumilio RNA binding family member 2 [Source:NCBI gene;Acc:421961]
58. RPL21 ENSGALG00000027035 506.07 4073.27 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPL27 ENSGALG00000002837 506.07 4073.27 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
60. RPL31 ENSGALG00000016775 506.07 4073.27 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
61. RPL35A ENSGALG00000007611, ENSGALG00000041230 506.07 4073.27 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
62. RPL6 ENSGALG00000004818 506.07 4073.27 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPL7A ENSGALG00000003197 506.07 4073.27 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
64. RPS12 ENSGALG00000013990 506.07 4073.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
65. RPS6 ENSGALG00000015082 506.07 4073.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
66. RPSA 506.07 4073.27 ribosomal protein SA
67. SMC2 ENSGALG00000015691 506.07 4073.27 structural maintenance of chromosomes 2 [Source:NCBI gene;Acc:396156]
68. SNRPE ENSGALG00000000137 506.07 4073.27 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
69. SOX9 ENSGALG00000004386 506.07 4073.27 SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
70. STMN1 ENSGALG00000001475 506.07 4073.27 stathmin 1 [Source:NCBI gene;Acc:396057]
71. SUB1 ENSGALG00000003248 506.07 4073.27 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
72. TARDBP ENSGALG00000002906 506.07 4073.27 TAR DNA binding protein [Source:NCBI gene;Acc:419453]
73. ACADS ENSGALG00000007072 253.04 2036.68 acyl-CoA dehydrogenase short chain [Source:NCBI gene;Acc:416969]
74. ACTN1 ENSGALG00000042458 253.04 2036.68 actinin, alpha 1 [Source:NCBI gene;Acc:373918]
75. ADAMTSL1 253.04 2036.68 ADAMTS like 1, transcript variant X3
76. ADD3 ENSGALG00000008542 253.04 2036.68 adducin 3 (gamma) [Source:NCBI gene;Acc:373892]
77. ADH5 ENSGALG00000012245 253.04 2036.68 alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
78. ANKRD49 ENSGALG00000017210 253.04 2036.68 ankyrin repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:25970]
79. ANKS1B ENSGALG00000011549 253.04 2036.68 ankyrin repeat and sterile alpha motif domain containing 1B [Source:NCBI gene;Acc:417927]
80. ANP32B ENSGALG00000037483 253.04 2036.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. ANXA2 ENSGALG00000003770 253.04 2036.68 annexin A2 [Source:NCBI gene;Acc:396297]
82. APLP2 ENSGALG00000001250 253.04 2036.68 amyloid beta precursor like protein 2 [Source:NCBI gene;Acc:419727]
83. ARGLU1 ENSGALG00000016855 253.04 2036.68 arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
84. ARHGAP18 ENSGALG00000031843 253.04 2036.68 Rho GTPase activating protein 18 [Source:HGNC Symbol;Acc:HGNC:21035]
85. ARHGEF7 ENSGALG00000031009 253.04 2036.68 Rho guanine nucleotide exchange factor 7 [Source:HGNC Symbol;Acc:HGNC:15607]
86. ARPC5L ENSGALG00000001014 253.04 2036.68 actin related protein 2/3 complex subunit 5 like [Source:HGNC Symbol;Acc:HGNC:23366]
87. ASF1A ENSGALG00000014887 253.04 2036.68 anti-silencing function 1A histone chaperone [Source:NCBI gene;Acc:723780]
88. ATP5G3 253.04 2036.68 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
89. ATP5MC1 ENSGALG00000001330 253.04 2036.68 ATP synthase membrane subunit c locus 1 [Source:HGNC Symbol;Acc:HGNC:841]
90. ATP6V1D ENSGALG00000009570 253.04 2036.68 ATPase H+ transporting V1 subunit D [Source:NCBI gene;Acc:423280]
91. BASP1 ENSGALG00000012952 253.04 2036.68 brain abundant membrane attached signal protein 1 [Source:NCBI gene;Acc:373905]
92. BCKDHB ENSGALG00000040702 253.04 2036.68 branched chain keto acid dehydrogenase E1, beta polypeptide [Source:NCBI gene;Acc:395375]
93. BCL2L1 ENSGALG00000006211 253.04 2036.68 BCL2 like 1 [Source:NCBI gene;Acc:373954]
94. C12orf45 C12orf45 253.04 2036.68
95. C20ORF7 C20ORF7 253.04 2036.68
96. C28H19ORF10 C28H19ORF10 253.04 2036.68
97. C4H8ORF40 C4H8ORF40 253.04 2036.68
98. C4orf46 ENSGALG00000009432 253.04 2036.68 chromosome 4 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:27320]
99. CABIN1 ENSGALG00000006363 253.04 2036.68 calcineurin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24187]
100. CAPZB ENSGALG00000004034 253.04 2036.68 capping actin protein of muscle Z-line beta subunit [Source:NCBI gene;Acc:396418]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA