Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s37.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 5601.70 45085.03
2. MT-ATP6 MT-ATP6 5200.34 41854.70
3. MT-CO3 MT-CO3 4921.12 39607.41
4. MT-ND4 MT-ND4 2722.32 21910.47
5. MT-CYB MT-CYB 2687.42 21629.58
6. gga-mir-3533 ENSGALG00000027736 2486.74 20014.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MT-ND1 MT-ND1 2303.50 18539.62
8. gga-mir-3527 gga-mir-3527 2198.80 17696.94
9. EEF1A EEF1A 1788.71 14396.35
10. MT-CO1 MT-CO1 1727.63 13904.75
11. MT-ND3 MT-ND3 1622.92 13062.00
12. KRT19 ENSGALG00000019719 1282.63 10323.19 keratin 19 [Source:NCBI gene;Acc:395861]
13. GAPDH ENSGALG00000014442 1177.93 9480.52 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. PPIA ENSGALG00000028600 1177.93 9480.52 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. NME2 ENSGALG00000002932 1134.30 9129.36 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. TTR ENSGALG00000015143 750.38 6039.40 transthyretin [Source:NCBI gene;Acc:396277]
17. RPL8 ENSGALG00000016232 619.50 4986.02 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. ENO1 ENSGALG00000002377 532.25 4283.79 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
19. RPL15 ENSGALG00000011290 532.25 4283.79 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL5 ENSGALG00000005922 532.25 4283.79 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. CNN3 ENSGALG00000005597 523.52 4213.53 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
22. RPS20 ENSGALG00000014432 523.52 4213.53 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
23. RPS3 ENSGALG00000017330 523.52 4213.53 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. S100A11 ENSGALG00000036711 514.80 4143.34 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
25. TMSB4X ENSGALG00000026383 506.07 4073.08 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. RPS4 RPS4 488.62 3932.64
27. RPS27A ENSGALG00000036790 471.17 3792.19 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
28. RPL7A ENSGALG00000003197 410.09 3300.59 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPL7 ENSGALG00000035252 392.64 3160.15 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. EIF4G2 ENSGALG00000005587 383.92 3089.96 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. RPS7 ENSGALG00000016392 383.92 3089.96 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. MDK ENSGALG00000008367 366.47 2949.52 midkine [Source:NCBI gene;Acc:423196]
33. RPL26 RPL26 366.47 2949.52
34. RPL31 ENSGALG00000016775 366.47 2949.52 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. TXN ENSGALG00000015704 340.29 2738.81 thioredoxin [Source:NCBI gene;Acc:396437]
36. ANXA2 ENSGALG00000003770 331.57 2668.63 annexin A2 [Source:NCBI gene;Acc:396297]
37. RPL27 ENSGALG00000002837 331.57 2668.63 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
38. RPL27A ENSGALG00000005948 331.57 2668.63 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPSA 331.57 2668.63 ribosomal protein SA
40. STMN1 ENSGALG00000001475 331.57 2668.63 stathmin 1 [Source:NCBI gene;Acc:396057]
41. GUCA2A ENSGALG00000027269 322.84 2598.36 guanylate cyclase activator 2A [Source:NCBI gene;Acc:419498]
42. RPL36 ENSGALG00000000474 314.11 2528.10 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. RPS10 ENSGALG00000002813 314.11 2528.10 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. RPS29 ENSGALG00000012229 314.11 2528.10 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. RPS11 ENSGALG00000017299 305.39 2457.92 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
46. RPS23 ENSGALG00000015617 305.39 2457.92 ribosomal protein S23
47. ATP5G3 296.66 2387.65 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
48. RPL32 ENSGALG00000027142 296.66 2387.65 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. TPT1 ENSGALG00000028872 296.66 2387.65 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
50. ENSGALG00000018384 ENSGALG00000018384 279.21 2247.21
51. ATP6V0C ENSGALG00000009229 270.49 2177.03 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
52. EEF1B2 ENSGALG00000008590 270.49 2177.03 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
53. RPL21 ENSGALG00000027035 270.49 2177.03 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. RPL23A ENSGALG00000003966 270.49 2177.03 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
55. CRHOA CRHOA 261.76 2106.76
56. DSP ENSGALG00000012790 261.76 2106.76 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
57. EIF1 ENSGALG00000028517 261.76 2106.76 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
58. RPL38 ENSGALG00000001465 261.76 2106.76 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
59. RPL4 ENSGALG00000007711 261.76 2106.76 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
60. RPS12 ENSGALG00000013990 261.76 2106.76 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. RPS24 ENSGALG00000004871 261.76 2106.76 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
62. ENSGALG00000018386 ENSGALG00000018386 253.04 2036.58
63. MT-ND2 MT-ND2 253.04 2036.58
64. RPL18A 253.04 2036.58 ribosomal protein L18a
65. MYL9 ENSGALG00000028567 244.31 1966.32 myosin, light chain 9, regulatory [Source:NCBI gene;Acc:396215]
66. RPL23 ENSGALG00000001634 244.31 1966.32 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
67. RPLP0 ENSGALG00000023294 235.59 1896.14 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
68. RPS6 ENSGALG00000015082 235.59 1896.14 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
69. LUM ENSGALG00000011271 226.86 1825.87 lumican [Source:NCBI gene;Acc:417891]
70. RAN ENSGALG00000002569 226.86 1825.87 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
71. RPL14 ENSGALG00000043379 226.86 1825.87 ribosomal protein L14
72. RPS15 ENSGALG00000015195 226.86 1825.87 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
73. RPS8 ENSGALG00000010124 226.86 1825.87 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
74. NDUFB9 ENSGALG00000042242 218.13 1755.61 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
75. RPS3A ENSGALG00000010077 218.13 1755.61 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
76. CDH1 ENSGALG00000000608 209.41 1685.43 cadherin 3 [Source:NCBI gene;Acc:414845]
77. CIRBP ENSGALG00000030918 209.41 1685.43 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
78. EIF4EBP1 ENSGALG00000003205 209.41 1685.43 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
79. ENSGALG00000028992 ENSGALG00000028992 209.41 1685.43
80. RPL10A ENSGALG00000002644 209.41 1685.43 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. RPL13 ENSGALG00000006179 209.41 1685.43 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
82. RPL36AL ENSGALG00000004952 209.41 1685.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
83. RPS14 ENSGALG00000004588 209.41 1685.43 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
84. RPS15A ENSGALG00000006771 209.41 1685.43 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
85. RPS16 ENSGALG00000026490 209.41 1685.43 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
86. SLC7A9 ENSGALG00000021158 209.41 1685.43 solute carrier family 7 member 9 [Source:NCBI gene;Acc:415768]
87. COX6A1 ENSGALG00000007205 200.68 1615.16 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
88. ERH ENSGALG00000017384 200.68 1615.16 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
89. GNG5 ENSGALG00000027561 200.68 1615.16 G protein subunit gamma 5 [Source:NCBI gene;Acc:424538]
90. NONO ENSGALG00000005507 200.68 1615.16 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
91. TF ENSGALG00000006453 200.68 1615.16 transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
92. APOA1 ENSGALG00000007114 191.96 1544.98 apolipoprotein A1 [Source:NCBI gene;Acc:396536]
93. RPLP1 ENSGALG00000030878 191.96 1544.98 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
94. gga-mir-3526 ENSGALG00000029121 191.96 1544.98 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
95. EIF4A2 ENSGALG00000008684 183.23 1474.72 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
96. MT-ND6 MT-ND6 183.23 1474.72
97. H3-IX H3-IX 174.51 1404.54
98. RPL3 ENSGALG00000012172 174.51 1404.54 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. RPL37 ENSGALG00000014833 174.51 1404.54 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
100. SNRPG ENSGALG00000028409 174.51 1404.54 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA