Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s33.

Sample reads: 124,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4892.30 39376.01
2. MT-ATP6 MT-ATP6 4887.52 39337.54
3. MT-ND5 MT-ND5 3461.46 27859.80
4. MT-CYB MT-CYB 2502.78 20143.80
5. gga-mir-3533 ENSGALG00000027736 2075.28 16703.03 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-ND4 MT-ND4 1954.05 15727.30
7. MT-CO1 MT-CO1 1917.36 15432.00
8. EEF1A EEF1A 1828.03 14713.02
9. gga-mir-3527 gga-mir-3527 1687.66 13583.25
10. MT-ND3 MT-ND3 1635.02 13159.57
11. MT-ND1 MT-ND1 1469.13 11824.39
12. GAPDH ENSGALG00000014442 1003.35 8075.53 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 910.83 7330.88 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. KRT19 ENSGALG00000019719 834.26 6714.60 keratin 19 [Source:NCBI gene;Acc:395861]
15. NME2 ENSGALG00000002932 816.71 6573.35 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. MDK ENSGALG00000008367 684.32 5507.80 midkine [Source:NCBI gene;Acc:423196]
17. ENSGALG00000018384 ENSGALG00000018384 614.13 4942.87
18. LUM ENSGALG00000011271 556.70 4480.64 lumican [Source:NCBI gene;Acc:417891]
19. RPL8 ENSGALG00000016232 523.21 4211.09 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL5 ENSGALG00000005922 521.61 4198.21 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. TMSB4X ENSGALG00000026383 504.07 4057.04 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. EIF4G2 ENSGALG00000005587 464.19 3736.06 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPL7A ENSGALG00000003197 459.40 3697.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPS3 ENSGALG00000017330 454.62 3659.04 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. RPS4 RPS4 411.55 3312.39
26. RPS7 ENSGALG00000016392 394.00 3171.14 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. RPL31 ENSGALG00000016775 378.05 3042.76 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
28. ENO1 ENSGALG00000002377 365.29 2940.06 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. HBZ ENSGALG00000023740 355.72 2863.04 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
30. DSP ENSGALG00000012790 354.12 2850.16 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
31. RPS23 ENSGALG00000015617 354.12 2850.16 ribosomal protein S23
32. RPL15 ENSGALG00000011290 349.34 2811.69 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. ATP6V0C ENSGALG00000009229 346.15 2786.01 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
34. MT-ND2 MT-ND2 339.77 2734.66
35. RPL26 RPL26 338.17 2721.78
36. HBE 334.98 2696.11 hemoglobin subunit epsilon
37. RPL18A 334.98 2696.11 ribosomal protein L18a
38. STMN1 ENSGALG00000001475 322.22 2593.41 stathmin 1 [Source:NCBI gene;Acc:396057]
39. RPS20 ENSGALG00000014432 319.03 2567.73 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPL27A ENSGALG00000005948 314.24 2529.18 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
41. CIRBP ENSGALG00000030918 311.05 2503.51 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. EEF1B2 ENSGALG00000008590 304.67 2452.16 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. CRHOA CRHOA 303.08 2439.36
44. RPS27A ENSGALG00000036790 301.48 2426.48 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. S100A11 ENSGALG00000036711 301.48 2426.48 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
46. RPL7 ENSGALG00000035252 298.29 2400.81 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
47. RPS6 ENSGALG00000015082 290.32 2336.66 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
48. RPS10 ENSGALG00000002813 283.94 2285.31 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
49. H3-IX H3-IX 274.36 2208.21
50. RPL36 ENSGALG00000000474 274.36 2208.21 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. RPS16 ENSGALG00000026490 271.17 2182.53 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. CNN3 ENSGALG00000005597 266.39 2144.06 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
53. RPL23 ENSGALG00000001634 261.60 2105.51 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
54. RPS12 ENSGALG00000013990 256.82 2067.03 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. RPL21 ENSGALG00000027035 250.44 2015.68 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. SLC25A6_1 ENSGALG00000016691 248.84 2002.81 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. HBG1 HBG1 245.65 1977.13
58. ENSGALG00000018386 ENSGALG00000018386 244.06 1964.33
59. RPS11 ENSGALG00000017299 244.06 1964.33 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
60. EIF4EBP1 ENSGALG00000003205 242.46 1951.46 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
61. ENSGALG00000028992 ENSGALG00000028992 242.46 1951.46
62. PNRC1 ENSGALG00000015780 236.08 1900.11 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
63. MAB21L2 228.11 1835.96 mab-21-like 2 (C. elegans)
64. RPS24 ENSGALG00000004871 226.51 1823.08 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
65. RAN ENSGALG00000002569 221.72 1784.53 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
66. RPL14 ENSGALG00000043379 221.72 1784.53 ribosomal protein L14
67. RPSA 221.72 1784.53 ribosomal protein SA
68. RPLP1 ENSGALG00000030878 218.53 1758.85 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
69. RPL10A ENSGALG00000002644 213.75 1720.38 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
70. RPL32 ENSGALG00000027142 213.75 1720.38 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
71. RPS15A ENSGALG00000006771 210.56 1694.71 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
72. RPS14 ENSGALG00000004588 205.77 1656.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. ATP5G3 199.39 1604.80 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. RPL23A ENSGALG00000003966 199.39 1604.80 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
75. RPL3 ENSGALG00000012172 199.39 1604.80 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
76. RPL6 ENSGALG00000004818 199.39 1604.80 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. MEIS2 ENSGALG00000039118 196.20 1579.13 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
78. RPL4 ENSGALG00000007711 196.20 1579.13 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
79. RPS15 ENSGALG00000015195 193.01 1553.45 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
80. CDC42 ENSGALG00000004796 191.42 1540.66 cell division cycle 42 [Source:NCBI gene;Acc:395917]
81. NDUFB9 ENSGALG00000042242 191.42 1540.66 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. RPL13 ENSGALG00000006179 191.42 1540.66 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
83. TPT1 ENSGALG00000028872 186.63 1502.10 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
84. EIF1 ENSGALG00000028517 185.04 1489.31 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
85. IGF2BP3 ENSGALG00000010961 185.04 1489.31 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
86. RPS29 ENSGALG00000012229 185.04 1489.31 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
87. RPL35A ENSGALG00000007611, ENSGALG00000041230 181.85 1463.63 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
88. HMGB1 ENSGALG00000042875 180.25 1450.75 high mobility group box 1 [Source:NCBI gene;Acc:395724]
89. RPL38 ENSGALG00000001465 178.66 1437.96 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
90. HMGN5 ENSGALG00000007131 177.06 1425.08 high mobility group nucleosome binding domain 5, transcript variant X1
91. RPL27 ENSGALG00000002837 177.06 1425.08 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
92. MT-ND6 MT-ND6 175.47 1412.28
93. CALM CALM 173.87 1399.40
94. ANP32B ENSGALG00000037483 172.28 1386.61 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
95. ENSGALG00000002696 ENSGALG00000002696 172.28 1386.61
96. UQCRFS1 ENSGALG00000025819 172.28 1386.61 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:NCBI gene;Acc:415752]
97. ACTG1_1 ENSGALG00000001381 170.68 1373.73 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
98. EIF4A2 ENSGALG00000008684 169.09 1360.93 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
99. LDB2 ENSGALG00000014485 169.09 1360.93 LIM domain binding 2 [Source:NCBI gene;Acc:395631]
100. RPL12 ENSGALG00000008806 169.09 1360.93 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA