Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s13.

Sample reads: 124,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4310.42 34693.25
2. MT-ATP6 MT-ATP6 3346.62 26935.92
3. MT-ND5 MT-ND5 3001.37 24157.11
4. EEF1A EEF1A 2270.81 18277.06
5. MT-CYB MT-CYB 2255.39 18152.95
6. MT-CO1 MT-CO1 1893.71 15241.89
7. MT-ND4 MT-ND4 1835.14 14770.48
8. gga-mir-3527 gga-mir-3527 1796.10 14456.26
9. GAPDH ENSGALG00000014442 1640.94 13207.42 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. gga-mir-3533 ENSGALG00000027736 1372.76 11048.93 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1371.73 11040.64
12. MT-ND3 MT-ND3 1256.65 10114.39
13. PPIA ENSGALG00000028600 860.03 6922.12 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 752.14 6053.75 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL8 ENSGALG00000016232 654.53 5268.11 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. RPL5 ENSGALG00000005922 633.98 5102.71 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS3 ENSGALG00000017330 515.81 4151.60 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. RPL7 ENSGALG00000035252 513.76 4135.10 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
19. RPL7A ENSGALG00000003197 502.45 4044.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
20. MDK ENSGALG00000008367 497.32 4002.78 midkine [Source:NCBI gene;Acc:423196]
21. RPL26 RPL26 487.04 3920.04
22. CIRBP ENSGALG00000030918 486.01 3911.75 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
23. RPS7 ENSGALG00000016392 481.90 3878.67 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. EIF4G2 ENSGALG00000005587 470.60 3787.72 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. ENO1 ENSGALG00000002377 470.60 3787.72 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
26. RPL23 ENSGALG00000001634 448.00 3605.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. RPS23 ENSGALG00000015617 439.78 3539.65 ribosomal protein S23
28. ENSGALG00000018384 ENSGALG00000018384 435.67 3506.57
29. RPL27A ENSGALG00000005948 432.58 3481.70 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL15 ENSGALG00000011290 411.01 3308.09 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. RPL18A 407.92 3283.22 ribosomal protein L18a
32. MT-ND2 MT-ND2 406.90 3275.01
33. RPL31 ENSGALG00000016775 405.87 3266.72 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. STMN1 ENSGALG00000001475 393.54 3167.48 stathmin 1 [Source:NCBI gene;Acc:396057]
35. RAN ENSGALG00000002569 390.46 3142.69 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
36. RPS4 RPS4 382.24 3076.53
37. RPS27A ENSGALG00000036790 356.55 2869.76 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPS6 ENSGALG00000015082 352.44 2836.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. EEF1B2 ENSGALG00000008590 350.38 2820.10 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
40. RPS10 ENSGALG00000002813 336.00 2704.36 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
41. RPS11 ENSGALG00000017299 330.86 2662.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. RPS16 ENSGALG00000026490 326.75 2629.91 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. H3-IX H3-IX 320.58 2580.25
44. ENSGALG00000018386 ENSGALG00000018386 313.39 2522.38
45. RPL21 ENSGALG00000027035 312.36 2514.09 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. TMSB4X ENSGALG00000026383 311.34 2505.88 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
47. RPS12 ENSGALG00000013990 310.31 2497.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPS20 ENSGALG00000014432 300.03 2414.85 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
49. ATP6V0C ENSGALG00000009229 293.87 2365.27 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
50. H2AFZ ENSGALG00000014023 291.81 2348.69 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. LDHB ENSGALG00000035836 283.59 2282.53 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
52. RPSA 277.43 2232.95 ribosomal protein SA
53. RPS29 ENSGALG00000012229 276.40 2224.66 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
54. NDUFB9 ENSGALG00000042242 274.35 2208.16 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
55. RPL35A ENSGALG00000007611, ENSGALG00000041230 273.32 2199.87 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
56. SNRPG ENSGALG00000028409 272.29 2191.58 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
57. RPS15A ENSGALG00000006771 260.99 2100.63 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
58. RPS24 ENSGALG00000004871 260.99 2100.63 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
59. RPL32 ENSGALG00000027142 259.96 2092.34 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. SLC25A6_1 ENSGALG00000016691 259.96 2092.34 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. RPL14 ENSGALG00000043379 258.93 2084.05 ribosomal protein L14
62. RPL27 ENSGALG00000002837 257.91 2075.84 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
63. ENSGALG00000028992 ENSGALG00000028992 256.88 2067.55
64. ATP5G3 255.85 2059.26 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. ENSGALG00000002696 ENSGALG00000002696 252.77 2034.47
66. FKBP4 ENSGALG00000014331 249.69 2009.68 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
67. RPL36 ENSGALG00000000474 249.69 2009.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. EIF1 ENSGALG00000028517 243.52 1960.02 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
69. CRHOA CRHOA 242.49 1951.73
70. RPL10A ENSGALG00000002644 242.49 1951.73 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
71. RPS14 ENSGALG00000004588 237.36 1910.44 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. RPL23A ENSGALG00000003966 234.27 1885.57 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
73. RPL38 ENSGALG00000001465 234.27 1885.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. CNN3 ENSGALG00000005597 232.22 1869.07 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
75. HMGN5 ENSGALG00000007131 231.19 1860.78 high mobility group nucleosome binding domain 5, transcript variant X1
76. ERH ENSGALG00000017384 222.97 1794.62 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
77. BTF3L4 ENSGALG00000010570 221.94 1786.33 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
78. MIF ENSGALG00000006326 221.94 1786.33 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
79. EIF4EBP1 ENSGALG00000003205 218.86 1761.54 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
80. RPL13 ENSGALG00000006179 215.78 1736.75 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
81. HNRNPDL ENSGALG00000023199 209.61 1687.09 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
82. CDK1 ENSGALG00000003085 205.50 1654.01 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
83. KRT19 ENSGALG00000019719 205.50 1654.01 keratin 19 [Source:NCBI gene;Acc:395861]
84. RPLP1 ENSGALG00000030878 199.34 1604.43 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
85. RPS15 ENSGALG00000015195 198.31 1596.14 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
86. HSPE1 ENSGALG00000009070 195.23 1571.35 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
87. HMGB1 ENSGALG00000042875 191.12 1538.27 high mobility group box 1 [Source:NCBI gene;Acc:395724]
88. RPL6 ENSGALG00000004818 191.12 1538.27 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
89. CALM_1 CALM_1 185.98 1496.90
90. RPL4 ENSGALG00000007711 185.98 1496.90 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
91. RPS3A ENSGALG00000010077 185.98 1496.90 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
92. TCEB3 ENSGALG00000034625 184.95 1488.61 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
93. RPL36AL ENSGALG00000004952 183.93 1480.40 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
94. HNRNPA3 ENSGALG00000009250 182.90 1472.11 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
95. TPT1 ENSGALG00000028872 182.90 1472.11 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. ANP32B ENSGALG00000037483 181.87 1463.82 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. RPL3 ENSGALG00000012172 179.82 1447.32 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
98. HMGB2 ENSGALG00000010745 178.79 1439.03 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. RPS21 ENSGALG00000005338 178.79 1439.03 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
100. SNRPE ENSGALG00000000137 178.79 1439.03 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA