Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s53.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3548.68 28568.40
2. MT-ATP6 MT-ATP6 3188.26 25666.86
3. MT-ND5 MT-ND5 3180.85 25607.21
4. EEF1A EEF1A 2088.48 16813.16
5. MT-CYB MT-CYB 2002.07 16117.52
6. GAPDH ENSGALG00000014442 1766.32 14219.63 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1321.96 10642.35
8. PPIA ENSGALG00000028600 1249.14 10056.11 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. gga-mir-3533 ENSGALG00000027736 1224.45 9857.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. gga-mir-3527 gga-mir-3527 1130.64 9102.14
11. NME2 ENSGALG00000002932 1086.21 8744.46 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-ND1 MT-ND1 792.44 6379.48
13. RPS23 ENSGALG00000015617 743.06 5981.95 ribosomal protein S23
14. MT-ND3 MT-ND3 702.33 5654.06
15. RPS6 ENSGALG00000015082 698.63 5624.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. MT-CO1 MT-CO1 643.08 5177.07
17. MDK ENSGALG00000008367 608.52 4898.85 midkine [Source:NCBI gene;Acc:423196]
18. RPL26 RPL26 578.90 4660.39
19. RPL8 ENSGALG00000016232 533.23 4292.73 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. EIF4G2 ENSGALG00000005587 528.29 4252.96 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. RPS7 ENSGALG00000016392 525.82 4233.08 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL23 ENSGALG00000001634 471.51 3795.86 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
23. ATP6V0C ENSGALG00000009229 464.11 3736.28 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. RPL15 ENSGALG00000011290 439.42 3537.52 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RAN ENSGALG00000002569 436.95 3517.64 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
26. RPL5 ENSGALG00000005922 436.95 3517.64 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
27. RPL27A ENSGALG00000005948 427.08 3438.18 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. ENSGALG00000002696 ENSGALG00000002696 424.61 3418.29
29. RPL7A ENSGALG00000003197 417.20 3358.64 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. ENO1 ENSGALG00000002377 401.16 3229.51 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. RPS27A ENSGALG00000036790 398.69 3209.63 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
32. STMN1 ENSGALG00000001475 397.45 3199.64 stathmin 1 [Source:NCBI gene;Acc:396057]
33. LDHB ENSGALG00000035836 394.98 3179.76 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
34. CIRBP ENSGALG00000030918 385.11 3100.30 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. TMSB4X ENSGALG00000026383 385.11 3100.30 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
36. RPS16 ENSGALG00000026490 378.94 3050.63 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
37. RPL18A 376.47 3030.75 ribosomal protein L18a
38. RPS4 RPS4 375.23 3020.76
39. CRABP-I ENSGALG00000003193 369.06 2971.09 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
40. RPS20 ENSGALG00000014432 369.06 2971.09 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. RPL7 ENSGALG00000035252 345.61 2782.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
42. RPL31 ENSGALG00000016775 344.38 2772.41 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. FKBP4 ENSGALG00000014331 329.56 2653.10 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
44. ENSGALG00000018384 ENSGALG00000018384 327.10 2633.30
45. ATP5G3 323.39 2603.43 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
46. RPL14 ENSGALG00000043379 306.11 2464.32 ribosomal protein L14
47. SLC25A6_1 ENSGALG00000016691 303.64 2444.43 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. H2AFZ ENSGALG00000014023 291.30 2345.09 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
49. EIF1 ENSGALG00000028517 285.13 2295.42 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. H3-IX H3-IX 283.89 2285.44
51. RPL27 ENSGALG00000002837 280.19 2255.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. KPNA2 ENSGALG00000003584 276.49 2225.86 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
53. RPL35A ENSGALG00000007611, ENSGALG00000041230 276.49 2225.86 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
54. SNRPG ENSGALG00000028409 276.49 2225.86 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. EEF1B2 ENSGALG00000008590 272.79 2196.08 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
56. HMGN5 ENSGALG00000007131 271.55 2186.09 high mobility group nucleosome binding domain 5, transcript variant X1
57. ENSGALG00000028992 ENSGALG00000028992 265.38 2136.42
58. MT-ND2 MT-ND2 265.38 2136.42
59. RPL37 ENSGALG00000014833 265.38 2136.42 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. RPS3 ENSGALG00000017330 260.44 2096.65 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
61. SNRPE ENSGALG00000000137 259.21 2086.75 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
62. RPS12 ENSGALG00000013990 257.97 2076.77 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
63. RPS10 ENSGALG00000002813 256.74 2066.87 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
64. RPL36 ENSGALG00000000474 251.80 2027.10 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
65. RPL38 ENSGALG00000001465 251.80 2027.10 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. RPLP1 ENSGALG00000030878 246.86 1987.33 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
67. RPL32 ENSGALG00000027142 244.40 1967.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. RPS29 ENSGALG00000012229 243.16 1957.54 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. RPS14 ENSGALG00000004588 241.93 1947.64 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. RPS8 ENSGALG00000010124 241.93 1947.64 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
71. ANP32B ENSGALG00000037483 230.82 1858.20 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. BTF3L4 ENSGALG00000010570 230.82 1858.20 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
73. MEIS2 ENSGALG00000039118 225.88 1818.43 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
74. CRHOA CRHOA 223.41 1798.55
75. TCF12 ENSGALG00000004304 223.41 1798.55 transcription factor 12 [Source:NCBI gene;Acc:396334]
76. TXN ENSGALG00000015704 222.18 1788.64 thioredoxin [Source:NCBI gene;Acc:396437]
77. HSPE1 ENSGALG00000009070 219.71 1768.76 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
78. RPS11 ENSGALG00000017299 217.24 1748.88 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
79. RPS24 ENSGALG00000004871 217.24 1748.88 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. HNRNPDL ENSGALG00000023199 212.30 1709.11 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
81. RPLP2 ENSGALG00000034811 211.07 1699.20 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
82. RPL10A ENSGALG00000002644 208.60 1679.32 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. RPL21 ENSGALG00000027035 208.60 1679.32 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
84. RPL3 ENSGALG00000012172 208.60 1679.32 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. CDK1 ENSGALG00000003085 207.37 1669.42 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
86. EIF5A2 ENSGALG00000009309 203.66 1639.55 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
87. RPSA 203.66 1639.55 ribosomal protein SA
88. YWHAZ ENSGALG00000031387 201.19 1619.67 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
89. CALM CALM 199.96 1609.76
90. TPT1 ENSGALG00000028872 196.26 1579.98 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
91. IGF2BP3 ENSGALG00000010961 195.02 1569.99 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
92. RPS21 ENSGALG00000005338 195.02 1569.99 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
93. MIF ENSGALG00000006326 188.85 1520.32 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
94. NDUFA11 ENSGALG00000021692 188.85 1520.32 NADH:ubiquinone oxidoreductase subunit A11
95. HSPA8 ENSGALG00000006512 187.62 1510.42 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
96. RPL6 ENSGALG00000004818 187.62 1510.42 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
97. NDUFB9 ENSGALG00000042242 186.38 1500.44 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
98. RPS15A ENSGALG00000006771 185.15 1490.54 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
99. RPL12 ENSGALG00000008806 183.91 1480.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
100. RPL23A ENSGALG00000003966 183.91 1480.55 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA