Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s45.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3913.69 31503.97
2. MT-ATP6 MT-ATP6 2780.09 22378.85
3. MT-ND5 MT-ND5 2449.61 19718.59
4. EEF1A EEF1A 2408.43 19387.10
5. MT-CYB MT-CYB 2178.96 17539.94
6. GAPDH ENSGALG00000014442 1991.66 16032.24 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1843.58 14840.24
8. gga-mir-3527 gga-mir-3527 1297.37 10443.42
9. PPIA ENSGALG00000028600 941.40 7577.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. NME2 ENSGALG00000002932 927.68 7467.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
11. gga-mir-3533 ENSGALG00000027736 916.89 7380.68 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND1 MT-ND1 890.41 7167.52
13. MT-ND3 MT-ND3 852.17 6859.70
14. MT-CO1 MT-CO1 792.35 6378.17
15. RPS23 ENSGALG00000015617 778.62 6267.65 ribosomal protein S23
16. RPS6 ENSGALG00000015082 681.54 5486.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. EIF4G2 ENSGALG00000005587 631.53 5083.62 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. RPL8 ENSGALG00000016232 566.80 4562.56 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL23 ENSGALG00000001634 549.15 4420.48 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
20. RPL5 ENSGALG00000005922 529.54 4262.63 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. MDK ENSGALG00000008367 513.85 4136.33 midkine [Source:NCBI gene;Acc:423196]
22. RPS7 ENSGALG00000016392 503.06 4049.47 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. ENO1 ENSGALG00000002377 500.12 4025.81 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPL26 RPL26 493.26 3970.59
25. RAN ENSGALG00000002569 481.49 3875.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
26. TMSB4X ENSGALG00000026383 462.86 3725.88 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
27. RPL7A ENSGALG00000003197 440.30 3544.28 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. ENSGALG00000002696 ENSGALG00000002696 400.10 3220.68
29. CIRBP ENSGALG00000030918 398.14 3204.90 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
30. RPS4 RPS4 393.23 3165.38
31. STMN1 ENSGALG00000001475 389.31 3133.82 stathmin 1 [Source:NCBI gene;Acc:396057]
32. LDHB ENSGALG00000035836 386.37 3110.16 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
33. FKBP4 ENSGALG00000014331 381.47 3070.71 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
34. RPL7 ENSGALG00000035252 379.50 3054.86 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. CRABP-I ENSGALG00000003193 371.66 2991.75 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
36. RPL27A ENSGALG00000005948 365.77 2944.33 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPL18A 356.95 2873.34 ribosomal protein L18a
38. RPS27A ENSGALG00000036790 356.95 2873.34 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. RPL15 ENSGALG00000011290 350.08 2818.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
40. RPS16 ENSGALG00000026490 337.34 2715.48 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. ATP6V0C ENSGALG00000009229 335.38 2699.70 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
42. KPNA2 ENSGALG00000003584 323.61 2604.96 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
43. RPL31 ENSGALG00000016775 322.63 2597.07 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
44. RPS12 ENSGALG00000013990 315.76 2541.77 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. H2AFZ ENSGALG00000014023 312.82 2518.10 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
46. SLC25A6_1 ENSGALG00000016691 312.82 2518.10 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. RPS3 ENSGALG00000017330 306.94 2470.77 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
48. ATP5G3 304.98 2454.99 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
49. RPS20 ENSGALG00000014432 293.21 2360.25 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
50. EEF1B2 ENSGALG00000008590 292.23 2352.36 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. RPL35A ENSGALG00000007611, ENSGALG00000041230 292.23 2352.36 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
52. H3-IX H3-IX 291.25 2344.47
53. RPS24 ENSGALG00000004871 283.40 2281.28 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. HMGN5 ENSGALG00000007131 280.46 2257.61 high mobility group nucleosome binding domain 5, transcript variant X1
55. TXN ENSGALG00000015704 275.56 2218.17 thioredoxin [Source:NCBI gene;Acc:396437]
56. RPL14 ENSGALG00000043379 274.58 2210.28 ribosomal protein L14
57. ENSGALG00000028992 ENSGALG00000028992 272.62 2194.51
58. ALDH1A2 ENSGALG00000004270 269.67 2170.76 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
59. RPS10 ENSGALG00000002813 267.71 2154.98 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
60. RPL27 ENSGALG00000002837 260.85 2099.76 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
61. RPS14 ENSGALG00000004588 258.89 2083.98 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
62. RPL37 ENSGALG00000014833 253.98 2044.46 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. PGK1 ENSGALG00000007936 253.00 2036.57 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
64. RPL36 ENSGALG00000000474 251.04 2020.79 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
65. BTF3L4 ENSGALG00000010570 249.08 2005.02 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
66. RPL38 ENSGALG00000001465 240.25 1933.94 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
67. ENSGALG00000018384 ENSGALG00000018384 238.29 1918.16
68. MT-ND2 MT-ND2 238.29 1918.16
69. RPSA 238.29 1918.16 ribosomal protein SA
70. IGF2BP3 ENSGALG00000010961 237.31 1910.27 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
71. RPLP1 ENSGALG00000030878 237.31 1910.27 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
72. TCF12 ENSGALG00000004304 236.33 1902.38 transcription factor 12 [Source:NCBI gene;Acc:396334]
73. EIF4A2 ENSGALG00000008684 234.37 1886.60 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
74. MIF ENSGALG00000006326 234.37 1886.60 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
75. SNRPE ENSGALG00000000137 234.37 1886.60 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
76. RPS15A ENSGALG00000006771 229.47 1847.16 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
77. RPS8 ENSGALG00000010124 228.49 1839.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. SNRPG ENSGALG00000028409 228.49 1839.27 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
79. RPS29 ENSGALG00000012229 227.51 1831.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
80. HSPE1 ENSGALG00000009070 225.54 1815.53 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
81. RPS11 ENSGALG00000017299 225.54 1815.53 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
82. MEIS2 ENSGALG00000039118 224.56 1807.64 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
83. CRHOA CRHOA 219.66 1768.19
84. RPL21 ENSGALG00000027035 216.72 1744.53 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
85. RPL10A ENSGALG00000002644 215.74 1736.64 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. HNRNPDL ENSGALG00000023199 211.82 1705.08 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. YWHAZ ENSGALG00000031387 209.85 1689.23 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
88. RPL32 ENSGALG00000027142 207.89 1673.45 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
89. CCT6 CCT6 205.93 1657.67
90. NDUFB9 ENSGALG00000042242 203.97 1641.89 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
91. HSPA8 ENSGALG00000006512 190.24 1531.37 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. ATP6V1G1 ENSGALG00000007190 185.34 1491.93 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
93. EIF1 ENSGALG00000028517 182.40 1468.26 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
94. HMGB1 ENSGALG00000042875 182.40 1468.26 high mobility group box 1 [Source:NCBI gene;Acc:395724]
95. HNRNPA3 ENSGALG00000009250 182.40 1468.26 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
96. RPL23A ENSGALG00000003966 179.46 1444.60 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
97. RPS15 ENSGALG00000015195 179.46 1444.60 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
98. RPL3 ENSGALG00000012172 176.51 1420.85 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. EIF5A2 ENSGALG00000009309 175.53 1412.96 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
100. HSP90AA1 ENSGALG00000033212 174.55 1405.07 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA