Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s43.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4235.97 34098.13
2. MT-ATP6 MT-ATP6 3804.30 30623.33
3. EEF1A EEF1A 2281.25 18363.29
4. MT-ND5 MT-ND5 2176.85 17522.91
5. MT-CYB MT-CYB 1922.14 15472.58
6. gga-mir-3527 gga-mir-3527 1727.41 13905.07
7. GAPDH ENSGALG00000014442 1706.68 13738.20 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-ND4 MT-ND4 1555.63 12522.30
9. MT-ND1 MT-ND1 1046.22 8421.72
10. MT-ND3 MT-ND3 1010.68 8135.63
11. MT-CO1 MT-CO1 982.54 7909.12
12. NME2 ENSGALG00000002932 905.54 7289.29 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. RPS23 ENSGALG00000015617 869.26 6997.25 ribosomal protein S23
14. gga-mir-3533 ENSGALG00000027736 834.46 6717.12 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
15. PPIA ENSGALG00000028600 818.91 6591.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPS6 ENSGALG00000015082 773.00 6222.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. RPL5 ENSGALG00000005922 620.48 4994.65 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL8 ENSGALG00000016232 596.04 4797.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. EIF4G2 ENSGALG00000005587 546.43 4398.58 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. TMSB4X ENSGALG00000026383 522.00 4201.92 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. MDK ENSGALG00000008367 513.11 4130.36 midkine [Source:NCBI gene;Acc:423196]
22. ENO1 ENSGALG00000002377 499.05 4017.18 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPS7 ENSGALG00000016392 496.82 3999.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL26 RPL26 489.42 3939.67
25. RPL7A ENSGALG00000003197 455.36 3665.49 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPL23 ENSGALG00000001634 447.96 3605.93 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. RAN ENSGALG00000002569 422.78 3403.24 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
28. RPL15 ENSGALG00000011290 422.04 3397.28 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. ENSGALG00000002696 ENSGALG00000002696 416.12 3349.63
30. STMN1 ENSGALG00000001475 392.42 3158.85 stathmin 1 [Source:NCBI gene;Acc:396057]
31. RPL7 ENSGALG00000035252 386.50 3111.19 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. CIRBP ENSGALG00000030918 362.07 2914.54 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. RPS4 RPS4 358.37 2884.76
34. RPS3 ENSGALG00000017330 355.40 2860.85 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
35. RPL18A 353.92 2848.94 ribosomal protein L18a
36. RPS27A ENSGALG00000036790 348.00 2801.28 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. KPNA2 ENSGALG00000003584 341.34 2747.67 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
38. RPS12 ENSGALG00000013990 332.45 2676.11 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
39. RPL27A ENSGALG00000005948 316.90 2550.94 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. H3-IX H3-IX 315.42 2539.02
41. RPL31 ENSGALG00000016775 310.24 2497.33 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. LDHB ENSGALG00000035836 308.02 2479.46 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
43. RPS16 ENSGALG00000026490 304.31 2449.59 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. MT-ND2 MT-ND2 303.57 2443.64
45. EEF1B2 ENSGALG00000008590 299.87 2413.85 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. H2AFZ ENSGALG00000014023 298.39 2401.94 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
47. SLC25A6_1 ENSGALG00000016691 294.69 2372.16 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. HMGN5 ENSGALG00000007131 293.95 2366.20 high mobility group nucleosome binding domain 5, transcript variant X1
49. RPL27 ENSGALG00000002837 280.62 2258.90 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPS24 ENSGALG00000004871 279.14 2246.98 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
51. RPS10 ENSGALG00000002813 277.66 2235.07 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
52. ENSGALG00000018384 ENSGALG00000018384 274.70 2211.24
53. RPL14 ENSGALG00000043379 273.96 2205.29 ribosomal protein L14
54. RPL37 ENSGALG00000014833 273.96 2205.29 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
55. ATP6V0C ENSGALG00000009229 271.74 2187.42 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
56. TCF12 ENSGALG00000004304 271.00 2181.46 transcription factor 12 [Source:NCBI gene;Acc:396334]
57. ALDH1A2 ENSGALG00000004270 270.25 2175.42 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
58. RPS8 ENSGALG00000010124 267.29 2151.59 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
59. RPS29 ENSGALG00000012229 264.33 2127.77 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 262.85 2115.85 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. RPL36 ENSGALG00000000474 259.89 2092.03 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
62. RPSA 256.93 2068.20 ribosomal protein SA
63. RPS20 ENSGALG00000014432 254.71 2050.33 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. FKBP4 ENSGALG00000014331 246.56 1984.72 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
65. RPS14 ENSGALG00000004588 245.82 1978.77 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. BTF3L4 ENSGALG00000010570 240.64 1937.07 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
67. CRABP-I ENSGALG00000003193 239.90 1931.11 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
68. TXN ENSGALG00000015704 239.90 1931.11 thioredoxin [Source:NCBI gene;Acc:396437]
69. ENSGALG00000028992 ENSGALG00000028992 238.42 1919.20
70. RPL38 ENSGALG00000001465 233.97 1883.38 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. IGF2BP3 ENSGALG00000010961 228.05 1835.73 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
72. RPS11 ENSGALG00000017299 227.31 1829.77 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
73. SNRPG ENSGALG00000028409 227.31 1829.77 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
74. ANP32B ENSGALG00000037483 226.57 1823.81 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. HNRNPA3 ENSGALG00000009250 226.57 1823.81 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
76. EIF5A2 ENSGALG00000009309 223.61 1799.99 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. HNRNPDL ENSGALG00000023199 222.13 1788.07 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
78. SNRPE ENSGALG00000000137 221.39 1782.11 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
79. CRHOA CRHOA 220.65 1776.16
80. HSPE1 ENSGALG00000009070 220.65 1776.16 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
81. RPL21 ENSGALG00000027035 220.65 1776.16 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
82. ATP5G3 217.68 1752.25 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. RPS15A ENSGALG00000006771 216.20 1740.34 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
84. NDUFB9 ENSGALG00000042242 213.98 1722.47 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
85. RPL6 ENSGALG00000004818 213.24 1716.51 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
86. MEIS2 ENSGALG00000039118 212.50 1710.55 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
87. PGK1 ENSGALG00000007936 212.50 1710.55 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
88. RPLP1 ENSGALG00000030878 211.76 1704.60 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
89. MIF ENSGALG00000006326 210.28 1692.68 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
90. CCT6 CCT6 206.58 1662.90
91. RPL4 ENSGALG00000007711 205.84 1656.94 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
92. RPL32 ENSGALG00000027142 202.88 1633.12 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
93. RPS15 ENSGALG00000015195 202.88 1633.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
94. HMGB1 ENSGALG00000042875 200.65 1615.16 high mobility group box 1 [Source:NCBI gene;Acc:395724]
95. RPL3 ENSGALG00000012172 199.91 1609.21 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
96. RPL10A ENSGALG00000002644 198.43 1597.29 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. YWHAZ ENSGALG00000031387 198.43 1597.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
98. CDK1 ENSGALG00000003085 196.95 1585.38 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
99. ENSGALG00000018386 ENSGALG00000018386 188.07 1513.90
100. RPL23A ENSGALG00000003966 184.37 1484.12 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA