Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s36.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4154.00 33437.69
2. MT-ATP6 MT-ATP6 3908.21 31459.20
3. MT-ND5 MT-ND5 2530.56 20369.78
4. EEF1A EEF1A 2314.02 18626.74
5. MT-CYB MT-CYB 1893.82 15244.33
6. GAPDH ENSGALG00000014442 1679.63 13520.21 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1555.56 12521.50
8. gga-mir-3527 gga-mir-3527 1320.29 10627.69
9. PPIA ENSGALG00000028600 1110.78 8941.24 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. MT-ND1 MT-ND1 1109.61 8931.82
11. MT-ND3 MT-ND3 975.00 7848.28
12. gga-mir-3533 ENSGALG00000027736 936.38 7537.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPS23 ENSGALG00000015617 916.48 7377.22 ribosomal protein S23
14. NME2 ENSGALG00000002932 889.56 7160.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MT-CO1 MT-CO1 770.17 6199.50
16. RPS6 ENSGALG00000015082 644.93 5191.37 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. TMSB4X ENSGALG00000026383 581.72 4682.56 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. RPL5 ENSGALG00000005922 557.14 4484.71 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL8 ENSGALG00000016232 554.80 4465.87 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. EIF4G2 ENSGALG00000005587 553.63 4456.45 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. ENO1 ENSGALG00000002377 539.59 4343.44 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
22. RPS7 ENSGALG00000016392 490.43 3947.72 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL23 ENSGALG00000001634 488.09 3928.89 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
24. RPL26 RPL26 481.06 3872.30
25. STMN1 ENSGALG00000001475 478.72 3853.46 stathmin 1 [Source:NCBI gene;Acc:396057]
26. ENSGALG00000002696 ENSGALG00000002696 448.29 3608.52
27. CIRBP ENSGALG00000030918 435.42 3504.92 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. RPL7A ENSGALG00000003197 427.22 3438.91 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. ENSGALG00000018384 ENSGALG00000018384 423.71 3410.66
30. RPS4 RPS4 423.71 3410.66
31. RPL27A ENSGALG00000005948 420.20 3382.41 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL15 ENSGALG00000011290 415.52 3344.73 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. RPL18A 402.64 3241.06 ribosomal protein L18a
34. RPL7 ENSGALG00000035252 390.94 3146.88 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. MDK ENSGALG00000008367 385.09 3099.79 midkine [Source:NCBI gene;Acc:423196]
36. RPL31 ENSGALG00000016775 362.85 2920.77 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RAN ENSGALG00000002569 332.41 2675.74 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
38. RPS15 ENSGALG00000015195 332.41 2675.74 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
39. RPS10 ENSGALG00000002813 321.88 2590.98 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
40. MT-ND2 MT-ND2 320.71 2581.56
41. HBE 314.86 2534.47 hemoglobin subunit epsilon
42. RPS12 ENSGALG00000013990 314.86 2534.47 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. HMGN5 ENSGALG00000007131 311.35 2506.22 high mobility group nucleosome binding domain 5, transcript variant X1
44. MT-ATP8 MT-ATP8 310.18 2496.80
45. RPL27 ENSGALG00000002837 309.00 2487.30 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. RPS27A ENSGALG00000036790 309.00 2487.30 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. LDHB ENSGALG00000035836 305.49 2459.05 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
48. RPS16 ENSGALG00000026490 301.98 2430.79 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPS3 ENSGALG00000017330 298.47 2402.54 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
50. SLC25A6_1 ENSGALG00000016691 292.62 2355.45 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. HBG1 HBG1 290.28 2336.61
52. RPS11 ENSGALG00000017299 287.94 2317.78 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. EEF1B2 ENSGALG00000008590 286.77 2308.36 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. FKBP4 ENSGALG00000014331 285.60 2298.94 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
55. ATP6V0C ENSGALG00000009229 282.08 2270.61 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
56. RPL14 ENSGALG00000043379 280.91 2261.19 ribosomal protein L14
57. RPS20 ENSGALG00000014432 279.74 2251.77 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
58. RPS29 ENSGALG00000012229 278.57 2242.35 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
59. RPLP1 ENSGALG00000030878 273.89 2204.68 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
60. RPS15A ENSGALG00000006771 272.72 2195.26 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. H2AFZ ENSGALG00000014023 266.87 2148.17 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
62. RPL37 ENSGALG00000014833 264.53 2129.34 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. RPS14 ENSGALG00000004588 264.53 2129.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. KPNA2 ENSGALG00000003584 258.67 2082.17 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
65. ATP5G3 256.33 2063.33 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. H3-IX H3-IX 256.33 2063.33
67. RPL38 ENSGALG00000001465 256.33 2063.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
68. ENSGALG00000018386 ENSGALG00000018386 251.65 2025.66
69. RPSA 249.31 2006.82 ribosomal protein SA
70. TCF12 ENSGALG00000004304 249.31 2006.82 transcription factor 12 [Source:NCBI gene;Acc:396334]
71. RPS24 ENSGALG00000004871 246.97 1987.99 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
72. RPS8 ENSGALG00000010124 239.95 1931.48 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
73. SNRPG ENSGALG00000028409 238.78 1922.06 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
74. RPL32 ENSGALG00000027142 236.44 1903.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
75. RPL35A ENSGALG00000007611, ENSGALG00000041230 235.26 1893.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
76. RPL13 ENSGALG00000006179 234.09 1884.31 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
77. RPL21 ENSGALG00000027035 232.92 1874.89 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
78. RPL36 ENSGALG00000000474 231.75 1865.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
79. RPL6 ENSGALG00000004818 230.58 1856.06 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
80. SNRPE ENSGALG00000000137 223.56 1799.55 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
81. CRHOA CRHOA 220.05 1771.30
82. TXN ENSGALG00000015704 216.54 1743.04 thioredoxin [Source:NCBI gene;Acc:396437]
83. EIF5A2 ENSGALG00000009309 214.20 1724.21 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
84. HNRNPA3 ENSGALG00000009250 210.68 1695.87 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
85. IGF2BP3 ENSGALG00000010961 207.17 1667.62 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
86. NDUFB9 ENSGALG00000042242 203.66 1639.36 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
87. HSPA8 ENSGALG00000006512 200.15 1611.11 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
88. HSPE1 ENSGALG00000009070 200.15 1611.11 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
89. ENSGALG00000028992 ENSGALG00000028992 198.98 1601.69
90. MIF ENSGALG00000006326 197.81 1592.27 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
91. ALDH1A2 ENSGALG00000004270 196.64 1582.86 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
92. RPL10A ENSGALG00000002644 194.30 1564.02 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. YWHAZ ENSGALG00000031387 194.30 1564.02 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. HBZ ENSGALG00000023740 190.79 1535.77 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
95. RPL4 ENSGALG00000007711 189.62 1526.35 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
96. BTF3L4 ENSGALG00000010570 187.28 1507.51 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
97. RPS21 ENSGALG00000005338 187.28 1507.51 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
98. RPL23A ENSGALG00000003966 183.76 1479.18 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
99. ANP32B ENSGALG00000037483 180.25 1450.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
100. CRABP-I ENSGALG00000003193 177.91 1432.09 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA