Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s34.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3978.27 32024.17
2. MT-ATP6 MT-ATP6 2878.02 23167.40
3. MT-ND5 MT-ND5 2769.29 22292.15
4. EEF1A EEF1A 2167.24 17445.79
5. MT-CYB MT-CYB 2011.45 16191.71
6. GAPDH ENSGALG00000014442 1580.60 12723.47 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1410.21 11351.87
8. PPIA ENSGALG00000028600 1313.65 10574.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. gga-mir-3527 gga-mir-3527 1251.17 10071.63
10. gga-mir-3533 ENSGALG00000027736 1089.70 8771.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1051.57 8464.90
12. NME2 ENSGALG00000002932 1029.66 8288.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. RPS23 ENSGALG00000015617 856.02 6890.77 ribosomal protein S23
14. MT-CO1 MT-CO1 798.41 6427.02
15. MT-ND3 MT-ND3 777.32 6257.25
16. RPS6 ENSGALG00000015082 632.08 5088.10 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. RPL5 ENSGALG00000005922 559.05 4500.23 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL15 ENSGALG00000011290 553.37 4454.50 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. EIF4G2 ENSGALG00000005587 551.75 4441.46 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. TMSB4X ENSGALG00000026383 538.77 4336.98 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. ENO1 ENSGALG00000002377 524.97 4225.89 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
22. RPL8 ENSGALG00000016232 484.40 3899.31 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPS7 ENSGALG00000016392 482.78 3886.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL18A 477.10 3840.55 ribosomal protein L18a
25. ENSGALG00000002696 ENSGALG00000002696 456.00 3670.70
26. RPL26 RPL26 455.19 3664.18
27. STMN1 ENSGALG00000001475 429.23 3455.20 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPL23 ENSGALG00000001634 417.87 3363.76 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. RPS27A ENSGALG00000036790 394.34 3174.35 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. RPL31 ENSGALG00000016775 391.09 3148.19 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
31. CIRBP ENSGALG00000030918 387.85 3122.10 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. RPL27A ENSGALG00000005948 376.49 3030.66 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. HBG1 HBG1 368.37 2965.29
34. RPL7 ENSGALG00000035252 360.26 2900.01 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. RPL7A ENSGALG00000003197 356.20 2867.33 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS16 ENSGALG00000026490 352.96 2841.25 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
37. RAN ENSGALG00000002569 345.65 2782.40 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
38. RPS10 ENSGALG00000002813 326.99 2632.19 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. ATP6V0C ENSGALG00000009229 323.75 2606.11 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
40. LDHB ENSGALG00000035836 319.69 2573.43 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. RPS4 RPS4 314.01 2527.71
42. H2AFZ ENSGALG00000014023 312.39 2514.67 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
43. RPS29 ENSGALG00000012229 305.90 2462.43 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
44. SLC25A6_1 ENSGALG00000016691 301.84 2429.74 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
45. RPL14 ENSGALG00000043379 300.22 2416.70 ribosomal protein L14
46. EEF1B2 ENSGALG00000008590 299.41 2410.18 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. H3-IX H3-IX 297.78 2397.06
48. ATP5G3 295.35 2377.50 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
49. HBE 294.54 2370.98 hemoglobin subunit epsilon
50. RPS20 ENSGALG00000014432 292.10 2351.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
51. RPS24 ENSGALG00000004871 288.86 2325.26 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
52. MDK ENSGALG00000008367 281.55 2266.41 midkine [Source:NCBI gene;Acc:423196]
53. RPS11 ENSGALG00000017299 279.93 2253.37 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. HMGN5 ENSGALG00000007131 278.31 2240.33 high mobility group nucleosome binding domain 5, transcript variant X1
55. FKBP4 ENSGALG00000014331 277.50 2233.81 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
56. RPS12 ENSGALG00000013990 274.25 2207.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
57. KPNA2 ENSGALG00000003584 271.82 2188.09 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
58. RPL27 ENSGALG00000002837 266.14 2142.37 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
59. RPLP1 ENSGALG00000030878 263.70 2122.72 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
60. EIF5A2 ENSGALG00000009309 258.02 2077.00 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
61. SNRPG ENSGALG00000028409 257.21 2070.48 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
62. TCF12 ENSGALG00000004304 256.40 2063.96 transcription factor 12 [Source:NCBI gene;Acc:396334]
63. RPL36 ENSGALG00000000474 255.59 2057.44 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
64. RPS14 ENSGALG00000004588 253.97 2044.40 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPS3 ENSGALG00000017330 248.29 1998.68 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
66. RPS8 ENSGALG00000010124 244.23 1966.00 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
67. MT-ND2 MT-ND2 242.61 1952.96
68. HBZ ENSGALG00000023740 241.80 1946.43 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
69. RPL21 ENSGALG00000027035 241.80 1946.43 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. RPL35A ENSGALG00000007611, ENSGALG00000041230 240.17 1933.31 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
71. RPL37 ENSGALG00000014833 239.36 1926.79 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
72. RPS15A ENSGALG00000006771 232.06 1868.03 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
73. MIF ENSGALG00000006326 231.25 1861.51 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
74. IGF2BP3 ENSGALG00000010961 224.76 1809.27 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
75. RPL13 ENSGALG00000006179 223.95 1802.75 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
76. RPSA 221.51 1783.11 ribosomal protein SA
77. RPL23A ENSGALG00000003966 219.89 1770.06 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
78. SNRPE ENSGALG00000000137 219.89 1770.06 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
79. ENSGALG00000018384 ENSGALG00000018384 219.08 1763.54
80. ENSGALG00000028992 ENSGALG00000028992 215.83 1737.38
81. TXN ENSGALG00000015704 213.40 1717.82 thioredoxin [Source:NCBI gene;Acc:396437]
82. ANP32B ENSGALG00000037483 211.77 1704.70 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. RPL32 ENSGALG00000027142 210.96 1698.18 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
84. HNRNPDL ENSGALG00000023199 206.91 1665.58 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
85. RPL38 ENSGALG00000001465 206.91 1665.58 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
86. RPL6 ENSGALG00000004818 204.47 1645.94 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
87. EIF1 ENSGALG00000028517 200.41 1613.25 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
88. CRHOA CRHOA 197.98 1593.69
89. HSPE1 ENSGALG00000009070 196.36 1580.65 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
90. RPS15 ENSGALG00000015195 195.55 1574.13 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
91. BTF3L4 ENSGALG00000010570 194.73 1567.53 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
92. NDUFB9 ENSGALG00000042242 193.92 1561.01 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
93. RPL4 ENSGALG00000007711 190.68 1534.93 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
94. CCT6 CCT6 189.06 1521.89
95. RPS21 ENSGALG00000005338 189.06 1521.89 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
96. RPL10A ENSGALG00000002644 188.24 1515.29 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. RPL3 ENSGALG00000012172 187.43 1508.77 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
98. YWHAZ ENSGALG00000031387 186.62 1502.25 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
99. HSPA8 ENSGALG00000006512 185.81 1495.73 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. PGK1 ENSGALG00000007936 180.13 1450.01 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA