Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s33.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4131.70 33255.09
2. MT-ATP6 MT-ATP6 3928.74 31621.51
3. MT-ND5 MT-ND5 2319.55 18669.51
4. EEF1A EEF1A 2264.67 18227.80
5. MT-CYB MT-CYB 2254.31 18144.41
6. GAPDH ENSGALG00000014442 1700.31 13685.40 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1313.03 10568.27
8. gga-mir-3527 gga-mir-3527 1052.08 8467.95
9. MT-ND1 MT-ND1 963.03 7751.20
10. PPIA ENSGALG00000028600 956.81 7701.14 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. NME2 ENSGALG00000002932 889.51 7159.46 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-CO1 MT-CO1 862.58 6942.70
13. gga-mir-3533 ENSGALG00000027736 855.33 6884.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. MT-ND3 MT-ND3 776.64 6250.99
15. RPS23 ENSGALG00000015617 742.46 5975.89 ribosomal protein S23
16. RPS6 ENSGALG00000015082 672.05 5409.17 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. EIF4G2 ENSGALG00000005587 638.91 5142.44 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. ENO1 ENSGALG00000002377 554.00 4459.02 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
19. TMSB4X ENSGALG00000026383 550.89 4433.98 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL8 ENSGALG00000016232 546.75 4400.66 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL5 ENSGALG00000005922 496.01 3992.27 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. RPS7 ENSGALG00000016392 491.87 3958.95 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. CIRBP ENSGALG00000030918 455.63 3667.26 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. RPL23 ENSGALG00000001634 444.24 3575.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. STMN1 ENSGALG00000001475 433.88 3492.20 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPL15 ENSGALG00000011290 421.45 3392.15 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL7A ENSGALG00000003197 418.35 3367.20 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL26 RPL26 412.13 3317.14
29. ENSGALG00000002696 ENSGALG00000002696 400.74 3225.46
30. MDK ENSGALG00000008367 366.57 2950.44 midkine [Source:NCBI gene;Acc:423196]
31. RAN ENSGALG00000002569 363.47 2925.48 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. RPL31 ENSGALG00000016775 352.07 2833.73 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
33. RPS4 RPS4 347.93 2800.41
34. HBZ ENSGALG00000023740 342.75 2758.71 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
35. RPS16 ENSGALG00000026490 334.47 2692.07 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
36. RPS27A ENSGALG00000036790 333.44 2683.78 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. H2AFZ ENSGALG00000014023 332.40 2675.41 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
38. LDHB ENSGALG00000035836 328.26 2642.09 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
39. RPS12 ENSGALG00000013990 327.22 2633.72 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. SLC25A6_1 ENSGALG00000016691 318.94 2567.07 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
41. RPL18A 317.90 2558.70 ribosomal protein L18a
42. HMGN5 ENSGALG00000007131 311.69 2508.72 high mobility group nucleosome binding domain 5, transcript variant X1
43. RPL7 ENSGALG00000035252 306.51 2467.03 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
44. ENSGALG00000018384 ENSGALG00000018384 296.16 2383.72
45. KPNA2 ENSGALG00000003584 292.01 2350.32 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
46. ATP6V0C ENSGALG00000009229 289.94 2333.66 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
47. RPL27A ENSGALG00000005948 286.84 2308.71 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
48. TCF12 ENSGALG00000004304 283.73 2283.68 transcription factor 12 [Source:NCBI gene;Acc:396334]
49. HBG1 HBG1 278.55 2241.98
50. RPLP1 ENSGALG00000030878 274.41 2208.66 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
51. RPL36 ENSGALG00000000474 269.23 2166.97 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
52. RPS10 ENSGALG00000002813 269.23 2166.97 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
53. RPS3 ENSGALG00000017330 264.06 2125.36 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
54. SNRPG ENSGALG00000028409 259.91 2091.95 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. RPS14 ENSGALG00000004588 256.81 2067.00 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. EEF1B2 ENSGALG00000008590 255.77 2058.63 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
57. RPL37 ENSGALG00000014833 254.74 2050.34 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
58. SNRPE ENSGALG00000000137 254.74 2050.34 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
59. CRABP-I ENSGALG00000003193 248.52 2000.28 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
60. RPS20 ENSGALG00000014432 248.52 2000.28 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
61. RPL21 ENSGALG00000027035 246.45 1983.62 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL35A ENSGALG00000007611, ENSGALG00000041230 245.42 1975.33 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
63. RPL14 ENSGALG00000043379 243.35 1958.67 ribosomal protein L14
64. MT-ND2 MT-ND2 241.27 1941.93
65. HNRNPA3 ENSGALG00000009250 240.24 1933.64 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
66. FKBP4 ENSGALG00000014331 239.20 1925.26 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
67. H3-IX H3-IX 239.20 1925.26
68. MIF ENSGALG00000006326 238.17 1916.97 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
69. RPL27 ENSGALG00000002837 234.03 1883.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. RPS24 ENSGALG00000004871 232.99 1875.28 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. HBE 229.88 1850.25 hemoglobin subunit epsilon
72. EIF5A2 ENSGALG00000009309 228.85 1841.96 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
73. HNRNPDL ENSGALG00000023199 228.85 1841.96 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
74. IGF2BP3 ENSGALG00000010961 227.81 1833.59 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
75. ENSGALG00000028992 ENSGALG00000028992 226.78 1825.30
76. EIF1 ENSGALG00000028517 222.64 1791.98 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
77. ANP32B ENSGALG00000037483 217.46 1750.28 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. ATP5G3 217.46 1750.28 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. HMGB2 ENSGALG00000010745 215.39 1733.62 high mobility group box 2 [Source:NCBI gene;Acc:396482]
80. CRHOA CRHOA 214.35 1725.25
81. RPL3 ENSGALG00000012172 214.35 1725.25 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
82. TXN ENSGALG00000015704 214.35 1725.25 thioredoxin [Source:NCBI gene;Acc:396437]
83. RPS8 ENSGALG00000010124 208.14 1675.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
84. BTF3L4 ENSGALG00000010570 205.03 1650.24 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
85. RPL38 ENSGALG00000001465 204.00 1641.95 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
86. NONO ENSGALG00000005507 199.85 1608.55 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
87. RPS11 ENSGALG00000017299 199.85 1608.55 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
88. RPS29 ENSGALG00000012229 197.78 1591.88 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
89. ALDH1A2 ENSGALG00000004270 195.71 1575.22 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
90. RPL32 ENSGALG00000027142 195.71 1575.22 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
91. MEIS2 ENSGALG00000039118 192.61 1550.27 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
92. PGK1 ENSGALG00000007936 192.61 1550.27 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
93. RPSA 191.57 1541.90 ribosomal protein SA
94. HMGB1 ENSGALG00000042875 188.46 1516.87 high mobility group box 1 [Source:NCBI gene;Acc:395724]
95. RPS15A ENSGALG00000006771 184.32 1483.55 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
96. NDUFB9 ENSGALG00000042242 183.29 1475.26 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
97. HSP90AA1 ENSGALG00000033212 182.25 1466.89 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
98. RPS21 ENSGALG00000005338 182.25 1466.89 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
99. ENSGALG00000018386 ENSGALG00000018386 181.21 1458.52
100. RPL10A ENSGALG00000002644 180.18 1450.23 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA