Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s17.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 9354.05 75290.35
2. MT-CYB MT-CYB 6475.88 52124.08
3. MT-CO3 MT-CO3 5396.56 43436.68
4. MT-ND5 MT-ND5 5156.72 41506.22
5. MT-ND4 MT-ND4 4557.10 36679.90
6. GAPDH ENSGALG00000014442 2398.47 19305.18 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. EEF1A EEF1A 2158.63 17374.72
8. gga-mir-3527 gga-mir-3527 2158.63 17374.72
9. MT-ND1 MT-ND1 2038.70 16409.41
10. MT-CO1 MT-CO1 1319.16 10617.86
11. NME2 ENSGALG00000002932 839.47 6756.86 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. RPS27A ENSGALG00000036790 839.47 6756.86 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
13. RPS6 ENSGALG00000015082 839.47 6756.86 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
14. SLC25A6_1 ENSGALG00000016691 839.47 6756.86 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
15. LDHB ENSGALG00000035836 719.54 5791.55 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
16. MT-ND3 MT-ND3 719.54 5791.55
17. PPIA ENSGALG00000028600 719.54 5791.55 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. RPL26 RPL26 719.54 5791.55
19. RPS23 ENSGALG00000015617 719.54 5791.55 ribosomal protein S23
20. ENSGALG00000002696 ENSGALG00000002696 599.62 4826.32
21. ENSGALG00000018384 ENSGALG00000018384 599.62 4826.32
22. RPS14 ENSGALG00000004588 599.62 4826.32 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
23. RPS7 ENSGALG00000016392 599.62 4826.32 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPS8 ENSGALG00000010124 599.62 4826.32 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
25. gga-mir-3533 ENSGALG00000027736 599.62 4826.32 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
26. ATP6V0C ENSGALG00000009229 479.69 3861.00 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
27. ENO1 ENSGALG00000002377 479.69 3861.00 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
28. ENSGALG00000018386 ENSGALG00000018386 479.69 3861.00
29. MKI67 ENSGALG00000025996 479.69 3861.00 marker of proliferation Ki-67, transcript variant X3
30. PGK1 ENSGALG00000007936 479.69 3861.00 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
31. RPL21 ENSGALG00000027035 479.69 3861.00 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
32. RPL23 ENSGALG00000001634 479.69 3861.00 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. RPL27A ENSGALG00000005948 479.69 3861.00 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPL7A ENSGALG00000003197 479.69 3861.00 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPS16 ENSGALG00000026490 479.69 3861.00 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
36. SNRPG ENSGALG00000028409 479.69 3861.00 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
37. ZNF207 ENSGALG00000003454 479.69 3861.00 zinc finger protein 207 [Source:HGNC Symbol;Acc:HGNC:12998]
38. ACTG1_1 ENSGALG00000001381 359.77 2895.77 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
39. COX7A2 ENSGALG00000015906 359.77 2895.77 cytochrome c oxidase subunit 7A2 [Source:NCBI gene;Acc:772260]
40. H3-IX H3-IX 359.77 2895.77
41. MIF ENSGALG00000006326 359.77 2895.77 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
42. MT-ND2 MT-ND2 359.77 2895.77
43. PHKG1 ENSGALG00000002485 359.77 2895.77 phosphorylase kinase catalytic subunit gamma 1 [Source:NCBI gene;Acc:417543]
44. PLS3 ENSGALG00000005930 359.77 2895.77 plastin 3 [Source:NCBI gene;Acc:422222]
45. RBF RBF 359.77 2895.77
46. RNF7 ENSGALG00000021117 359.77 2895.77 ring finger protein 7 [Source:NCBI gene;Acc:424781]
47. RPL15 ENSGALG00000011290 359.77 2895.77 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
48. RPL19 ENSGALG00000001658 359.77 2895.77 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
49. RPL23A ENSGALG00000003966 359.77 2895.77 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
50. RPL27 ENSGALG00000002837 359.77 2895.77 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. RPS15A ENSGALG00000006771 359.77 2895.77 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. RPS20 ENSGALG00000014432 359.77 2895.77 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
53. RPSA 359.77 2895.77 ribosomal protein SA
54. SHFM1 SHFM1 359.77 2895.77
55. UQCRFS1 ENSGALG00000025819 359.77 2895.77 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:NCBI gene;Acc:415752]
56. ACTL6A ENSGALG00000009061 239.85 1930.54 actin like 6A [Source:HGNC Symbol;Acc:HGNC:24124]
57. ADD3 ENSGALG00000008542 239.85 1930.54 adducin 3 (gamma) [Source:NCBI gene;Acc:373892]
58. AIMP1 ENSGALG00000010553 239.85 1930.54 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:HGNC:10648]
59. ARF4 ENSGALG00000005622 239.85 1930.54 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
60. ATP5C1 239.85 1930.54 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
61. ATP6V1D ENSGALG00000009570 239.85 1930.54 ATPase H+ transporting V1 subunit D [Source:NCBI gene;Acc:423280]
62. BTF3 ENSGALG00000013512 239.85 1930.54 basic transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:1125]
63. CCNB2 ENSGALG00000004161 239.85 1930.54 cyclin B2 [Source:NCBI gene;Acc:415400]
64. CDC42 ENSGALG00000004796 239.85 1930.54 cell division cycle 42 [Source:NCBI gene;Acc:395917]
65. CHCHD2 ENSGALG00000002495 239.85 1930.54 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
66. CIRBP ENSGALG00000030918 239.85 1930.54 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
67. CLTC ENSGALG00000005139 239.85 1930.54 clathrin heavy chain [Source:NCBI gene;Acc:395272]
68. CMC1 ENSGALG00000025811 239.85 1930.54 C-X9-C motif containing 1
69. CRABP-I ENSGALG00000003193 239.85 1930.54 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
70. CRHOA CRHOA 239.85 1930.54
71. CRHOB CRHOB 239.85 1930.54
72. DCK ENSGALG00000028501 239.85 1930.54 deoxycytidine kinase [Source:NCBI gene;Acc:422648]
73. DNMT3A ENSGALG00000041454 239.85 1930.54 DNA methyltransferase 3 alpha [Source:NCBI gene;Acc:421991]
74. DYL1 ENSGALG00000007153 239.85 1930.54 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
75. EEF1B2 ENSGALG00000008590 239.85 1930.54 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
76. EEF2 ENSGALG00000033884 239.85 1930.54 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
77. EIF4G2 ENSGALG00000005587 239.85 1930.54 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
78. ENSGALG00000028992 ENSGALG00000028992 239.85 1930.54
79. EPRS ENSGALG00000009598 239.85 1930.54 glutamyl-prolyl-tRNA synthetase [Source:NCBI gene;Acc:421348]
80. FUBP3 ENSGALG00000003941 239.85 1930.54 far upstream element binding protein 3 [Source:NCBI gene;Acc:417184]
81. FUT8 ENSGALG00000036443 239.85 1930.54 fucosyltransferase 8 [Source:NCBI gene;Acc:423178]
82. GNB1 ENSGALG00000001334 239.85 1930.54 G protein subunit beta 1 [Source:NCBI gene;Acc:419402]
83. GPATCH2 ENSGALG00000009627 239.85 1930.54 G-patch domain containing 2 [Source:NCBI gene;Acc:421355]
84. HMGN5 ENSGALG00000007131 239.85 1930.54 high mobility group nucleosome binding domain 5, transcript variant X1
85. HSPA8 ENSGALG00000006512 239.85 1930.54 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
86. IAH1 ENSGALG00000016425 239.85 1930.54 isoamyl acetate hydrolyzing esterase 1 (putative) [Source:NCBI gene;Acc:421930]
87. IGF2BP3 ENSGALG00000010961 239.85 1930.54 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
88. KDELR3 ENSGALG00000032313 239.85 1930.54 KDEL endoplasmic reticulum protein retention receptor 3 [Source:NCBI gene;Acc:418026]
89. KPNA2 ENSGALG00000003584 239.85 1930.54 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
90. MTX2 ENSGALG00000009264 239.85 1930.54 metaxin 2 [Source:HGNC Symbol;Acc:HGNC:7506]
91. NDP ENSGALG00000016222 239.85 1930.54 NDP, norrin cystine knot growth factor [Source:NCBI gene;Acc:418560]
92. NDUFA10 ENSGALG00000004302 239.85 1930.54 NADH:ubiquinone oxidoreductase subunit A10 [Source:NCBI gene;Acc:424032]
93. NDUFB9 ENSGALG00000042242 239.85 1930.54 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
94. NOL6 ENSGALG00000030730 239.85 1930.54 nucleolar protein 6
95. NUDCD2 ENSGALG00000001726 239.85 1930.54 NudC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30535]
96. OAZ OAZ 239.85 1930.54
97. PAFAH1B1 ENSGALG00000005834 239.85 1930.54 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [Source:NCBI gene;Acc:374224]
98. PRDX1 ENSGALG00000010243 239.85 1930.54 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. PRDX3 ENSGALG00000009369 239.85 1930.54 peroxiredoxin 3 [Source:HGNC Symbol;Acc:HGNC:9354]
100. PSMA1 ENSGALG00000006022 239.85 1930.54 proteasome subunit alpha 1 [Source:NCBI gene;Acc:395874]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA