Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s66.

Sample reads: 236,190. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6850.00 29003.06
2. HBG1 HBG1 5484.00 23219.38
3. HBZ ENSGALG00000023740 4689.00 19853.33 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
4. HBE 3169.00 13417.62 hemoglobin subunit epsilon
5. gga-mir-3527 gga-mir-3527 3020.00 12786.75
6. EEF1A EEF1A 2732.00 11567.35
7. RPS15A ENSGALG00000006771 2492.00 10551.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
8. RPS29 ENSGALG00000012229 2484.00 10517.31 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. RPL23A ENSGALG00000003966 2268.00 9602.76 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 2189.00 9268.28 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPL36 ENSGALG00000000474 2075.00 8785.60 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
12. RPL14 ENSGALG00000043379 2008.00 8501.92 ribosomal protein L14
13. RPL29 ENSGALG00000026978 1961.00 8302.92 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
14. RPS21 ENSGALG00000005338 1843.00 7803.30 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
15. RPS23 ENSGALG00000015617 1764.00 7468.82 ribosomal protein S23
16. RPL27 ENSGALG00000002837 1705.00 7219.01 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
17. RPS24 ENSGALG00000004871 1705.00 7219.01 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
18. RPS8 ENSGALG00000010124 1642.00 6952.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPS10 ENSGALG00000002813 1583.00 6702.46 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
20. RPL18A 1520.00 6435.71 ribosomal protein L18a
21. RPL19 ENSGALG00000001658 1516.00 6418.78 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPL24 ENSGALG00000015339 1469.00 6219.78 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
23. RPL35 ENSGALG00000035677 1453.00 6152.04 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPL32 ENSGALG00000027142 1362.00 5766.74 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
25. RPL12 ENSGALG00000008806 1346.00 5698.99 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
26. RPL36AL ENSGALG00000004952 1335.00 5652.42 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
27. RPL4 ENSGALG00000007711 1319.00 5584.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
28. RPL23 ENSGALG00000001634 1303.00 5516.93 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. RPL27A ENSGALG00000005948 1260.00 5334.87 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPS12 ENSGALG00000013990 1240.00 5250.19 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
31. RPS7 ENSGALG00000016392 1236.00 5233.25 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. PRDX1 ENSGALG00000010243 1193.00 5051.19 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
33. RPL26 RPL26 1193.00 5051.19
34. RPS11 ENSGALG00000017299 1189.00 5034.25 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. MT-ND3 MT-ND3 1177.00 4983.44
36. MT-ND4 MT-ND4 1150.00 4869.13
37. MT-ATP6 MT-ATP6 1142.00 4835.25
38. CIRBP ENSGALG00000030918 1094.00 4632.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. RPL13 ENSGALG00000006179 1083.00 4585.45 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
40. RPL38 ENSGALG00000001465 1079.00 4568.51 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. RPS2 ENSGALG00000005490 1012.00 4284.83 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
42. RPS15 ENSGALG00000015195 980.00 4149.34 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. RPS4 RPS4 980.00 4149.34
44. RPL21 ENSGALG00000027035 976.00 4132.41 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. TCEB3 ENSGALG00000034625 969.00 4102.77 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
46. RPL5 ENSGALG00000005922 961.00 4068.90 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
47. gga-mir-3533 ENSGALG00000027736 953.00 4035.02 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
48. MT-CYB MT-CYB 925.00 3916.47
49. RPS13 ENSGALG00000006096 925.00 3916.47 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
50. MT-ND5 MT-ND5 906.00 3836.02
51. RPL7A ENSGALG00000003197 874.00 3700.54 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
52. ENSGALG00000028992 ENSGALG00000028992 866.00 3666.66
53. EEF1D 858.00 3632.79 eukaryotic translation elongation factor 1 delta, transcript variant X13
54. MT-ND1 MT-ND1 858.00 3632.79
55. RPS16 ENSGALG00000026490 799.00 3382.98 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. LDHB ENSGALG00000035836 780.00 3302.54 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
57. SNRPD1 ENSGALG00000041334 776.00 3285.60 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
58. RPS14 ENSGALG00000004588 772.00 3268.67 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. RPL37A ENSGALG00000011472 760.00 3217.86 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
60. RPL7 ENSGALG00000035252 752.00 3183.99 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
61. RPLP1 ENSGALG00000030878 728.00 3082.37 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. RPS25 ENSGALG00000007699 701.00 2968.05 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
63. MT-CO1 MT-CO1 685.00 2900.31
64. RPL31 ENSGALG00000016775 677.00 2866.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
65. RPL15 ENSGALG00000011290 650.00 2752.11 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
66. TMSB4X ENSGALG00000026383 642.00 2718.24 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
67. ATP5G3 638.00 2701.31 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. RPS3 ENSGALG00000017330 634.00 2684.37 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
69. CRHOA CRHOA 583.00 2468.44
70. RPS27A ENSGALG00000036790 579.00 2451.50 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
71. ENO1 ENSGALG00000002377 575.00 2434.56 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. NME2 ENSGALG00000002932 575.00 2434.56 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
73. RPL37 ENSGALG00000014833 555.00 2349.88 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
74. RPL6 ENSGALG00000004818 547.00 2316.01 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
75. STMN1 ENSGALG00000001475 539.00 2282.14 stathmin 1 [Source:NCBI gene;Acc:396057]
76. TPT1 ENSGALG00000028872 528.00 2235.56 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
77. H3-IX H3-IX 524.00 2218.63
78. UBB ENSGALG00000004509 520.00 2201.69 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
79. EIF5A2 ENSGALG00000009309 500.00 2117.01 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. RPS20 ENSGALG00000014432 492.00 2083.14 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
81. COX7B ENSGALG00000007863 465.00 1968.82 cytochrome c oxidase subunit 7B [Source:NCBI gene;Acc:771947]
82. FKBP12 FKBP12 457.00 1934.95
83. TXN ENSGALG00000015704 457.00 1934.95 thioredoxin [Source:NCBI gene;Acc:396437]
84. FTH FTH 449.00 1901.08
85. SEC61G ENSGALG00000037863 449.00 1901.08 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
86. CHCHD2 ENSGALG00000002495 445.00 1884.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
87. HNRNPDL ENSGALG00000023199 425.00 1799.46 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
88. ANP32B ENSGALG00000037483 421.00 1782.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. SLC25A6_1 ENSGALG00000016691 421.00 1782.52 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. RPL8 ENSGALG00000016232 417.00 1765.59 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
91. RPS6 ENSGALG00000015082 417.00 1765.59 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
92. UQCR10 ENSGALG00000008066 409.00 1731.72 ubiquinol-cytochrome c reductase, complex III subunit X [Source:NCBI gene;Acc:770937]
93. HSPE1 ENSGALG00000009070 402.00 1702.08 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
94. GAPDH ENSGALG00000014442 390.00 1651.27 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
95. YWHAZ ENSGALG00000031387 386.00 1634.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
96. RAN ENSGALG00000002569 382.00 1617.40 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
97. RPLP0 ENSGALG00000023294 374.00 1583.52 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
98. MDK ENSGALG00000008367 366.00 1549.65 midkine [Source:NCBI gene;Acc:423196]
99. UQCRH ENSGALG00000017380 362.00 1532.72 ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
100. RBF RBF 358.00 1515.78
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA