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Experiment Chicken_E3_anterior_slice_3, section s7.

Sample reads: 124,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4740.13 38149.74
2. MT-ATP6 MT-ATP6 4639.70 37341.45
3. MT-ND5 MT-ND5 4030.45 32438.06
4. MT-CYB MT-CYB 2102.26 16919.51
5. GAPDH ENSGALG00000014442 1667.08 13417.07 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. MT-ND4 MT-ND4 1613.52 12986.01
7. gga-mir-3527 gga-mir-3527 1606.82 12932.08
8. EEF1A EEF1A 1439.45 11585.05
9. MT-CO1 MT-CO1 1365.80 10992.30
10. MT-ND1 MT-ND1 1365.80 10992.30
11. MT-ND3 MT-ND3 1298.85 10453.47
12. PPIA ENSGALG00000028600 1171.64 9429.65 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. gga-mir-3533 ENSGALG00000027736 930.62 7489.86 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. CRABP-I ENSGALG00000003193 877.06 7058.80 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
15. RPL5 ENSGALG00000005922 729.77 5873.37 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. NME2 ENSGALG00000002932 656.12 5280.62 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPL18A 582.47 4687.86 ribosomal protein L18a
18. RPS23 ENSGALG00000015617 555.69 4472.33 ribosomal protein S23
19. RPS6 ENSGALG00000015082 535.61 4310.72 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. STMN1 ENSGALG00000001475 515.52 4149.03 stathmin 1 [Source:NCBI gene;Acc:396057]
21. RPL26 RPL26 488.74 3933.50
22. EIF4G2 ENSGALG00000005587 482.05 3879.66 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. ENO1 ENSGALG00000002377 475.35 3825.73 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPL15 ENSGALG00000011290 448.57 3610.20 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPS7 ENSGALG00000016392 441.88 3556.36 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. ENSGALG00000002696 ENSGALG00000002696 428.49 3448.59
27. RPL8 ENSGALG00000016232 428.49 3448.59 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. CRHOB CRHOB 421.79 3394.67
29. RPS11 ENSGALG00000017299 421.79 3394.67 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
30. RPS4 RPS4 415.10 3340.83
31. CIRBP ENSGALG00000030918 395.01 3179.14 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. RPL7 ENSGALG00000035252 395.01 3179.14 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
33. RPL27A ENSGALG00000005948 388.32 3125.30 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPL23 ENSGALG00000001634 381.62 3071.37 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. ATP6V0C ENSGALG00000009229 354.84 2855.84 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. ENSGALG00000018384 ENSGALG00000018384 341.45 2748.07
37. FKBP4 ENSGALG00000014331 341.45 2748.07 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
38. RPS3 ENSGALG00000017330 341.45 2748.07 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
39. RPL7A ENSGALG00000003197 334.75 2694.15 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPL31 ENSGALG00000016775 321.36 2586.38 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. RPS27A ENSGALG00000036790 321.36 2586.38 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. RPS10 ENSGALG00000002813 307.97 2478.62 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
43. RPS16 ENSGALG00000026490 307.97 2478.62 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. ANP32B ENSGALG00000037483 301.28 2424.78 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
45. HMGN5 ENSGALG00000007131 301.28 2424.78 high mobility group nucleosome binding domain 5, transcript variant X1
46. RPLP1 ENSGALG00000030878 301.28 2424.78 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
47. ATP5G3 287.89 2317.01 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
48. HMGN2 HMGN2 287.89 2317.01
49. RPS12 ENSGALG00000013990 287.89 2317.01 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. EIF1 ENSGALG00000028517 281.19 2263.09 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
51. LDHB ENSGALG00000035836 281.19 2263.09 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
52. RPL10A ENSGALG00000002644 281.19 2263.09 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
53. PNRC1 ENSGALG00000015780 267.80 2155.32 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
54. RPS24 ENSGALG00000004871 267.80 2155.32 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
55. H2AFZ ENSGALG00000014023 261.11 2101.48 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
56. HNRNPDL ENSGALG00000023199 261.11 2101.48 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
57. RPL36 ENSGALG00000000474 261.11 2101.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. PRTG ENSGALG00000037336 254.41 2047.55 protogenin [Source:NCBI gene;Acc:415407]
59. RPL21 ENSGALG00000027035 254.41 2047.55 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPS8 ENSGALG00000010124 254.41 2047.55 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
61. SLC25A6_1 ENSGALG00000016691 254.41 2047.55 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
62. EIF3F ENSGALG00000005326 247.72 1993.71 eukaryotic translation initiation factor 3 subunit F
63. RPL35A ENSGALG00000007611, ENSGALG00000041230 247.72 1993.71 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
64. TMSB4X ENSGALG00000026383 247.72 1993.71 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
65. ENSGALG00000018386 ENSGALG00000018386 241.02 1939.79
66. MT-ND2 MT-ND2 241.02 1939.79
67. RPS15A ENSGALG00000006771 241.02 1939.79 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
68. EIF5A2 ENSGALG00000009309 227.63 1832.02 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
69. RPL37 ENSGALG00000014833 227.63 1832.02 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
70. RPS20 ENSGALG00000014432 227.63 1832.02 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
71. SNRPG ENSGALG00000028409 227.63 1832.02 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
72. MDK ENSGALG00000008367 220.94 1778.18 midkine [Source:NCBI gene;Acc:423196]
73. NONO ENSGALG00000005507 220.94 1778.18 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
74. RPS15 ENSGALG00000015195 220.94 1778.18 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
75. ENSGALG00000028992 ENSGALG00000028992 214.24 1724.26
76. RAN ENSGALG00000002569 214.24 1724.26 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. EEF1B2 ENSGALG00000008590 207.55 1670.41 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
78. H3-IX H3-IX 207.55 1670.41
79. RPL38 ENSGALG00000001465 207.55 1670.41 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
80. RPL4 ENSGALG00000007711 207.55 1670.41 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
81. TPT1 ENSGALG00000028872 207.55 1670.41 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
82. CRHOA CRHOA 200.85 1616.49
83. ERH ENSGALG00000017384 200.85 1616.49 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
84. FTH FTH 200.85 1616.49
85. PTBP1 ENSGALG00000001962 200.85 1616.49 polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
86. EEF1D 194.16 1562.65 eukaryotic translation elongation factor 1 delta, transcript variant X13
87. KPNA2 ENSGALG00000003584 194.16 1562.65 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
88. MIF ENSGALG00000006326 194.16 1562.65 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
89. NR2F1 ENSGALG00000027907 194.16 1562.65 nuclear receptor subfamily 2 group F member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
90. RPL14 ENSGALG00000043379 194.16 1562.65 ribosomal protein L14
91. RPL27 ENSGALG00000002837 194.16 1562.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
92. HMGB2 ENSGALG00000010745 187.46 1508.72 high mobility group box 2 [Source:NCBI gene;Acc:396482]
93. MEIS2 ENSGALG00000039118 180.77 1454.88 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
94. RPL23A ENSGALG00000003966 180.77 1454.88 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
95. RPS29 ENSGALG00000012229 180.77 1454.88 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
96. SNRPE ENSGALG00000000137 180.77 1454.88 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
97. TXN ENSGALG00000015704 180.77 1454.88 thioredoxin [Source:NCBI gene;Acc:396437]
98. HSPA8 ENSGALG00000006512 174.07 1400.96 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. RPL12 ENSGALG00000008806 174.07 1400.96 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
100. RPL32 ENSGALG00000027142 174.07 1400.96 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA