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Experiment Chicken_E3_anterior_slice_3, section s54.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 5774.20 46479.64
2. MT-CO3 MT-CO3 4974.07 40038.96
3. MT-ATP6 MT-ATP6 4549.75 36623.38
4. MT-CYB MT-CYB 2253.38 18138.67
5. MT-ND4 MT-ND4 2105.00 16944.28
6. MT-ND3 MT-ND3 1827.66 14711.82
7. gga-mir-3527 gga-mir-3527 1751.40 14097.96
8. gga-mir-3533 ENSGALG00000027736 1737.53 13986.31 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. EEF1A EEF1A 1569.74 12635.68
10. MT-CO1 MT-CO1 1569.74 12635.68
11. MT-ND1 MT-ND1 1496.24 12044.04
12. GAPDH ENSGALG00000014442 1320.13 10626.44 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1254.96 10101.85 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 841.72 6775.46 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MDK ENSGALG00000008367 754.36 6072.25 midkine [Source:NCBI gene;Acc:423196]
16. RPL5 ENSGALG00000005922 650.36 5235.10 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS23 ENSGALG00000015617 569.93 4587.67 ribosomal protein S23
18. EIF4G2 ENSGALG00000005587 536.65 4319.78 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPS6 ENSGALG00000015082 531.10 4275.11 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. RPL8 ENSGALG00000016232 477.02 3839.79 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. ATP6V0C ENSGALG00000009229 468.70 3772.82 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
22. ENO1 ENSGALG00000002377 411.85 3315.20 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPS7 ENSGALG00000016392 410.46 3304.01 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL15 ENSGALG00000011290 406.30 3270.53 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPL26 RPL26 396.59 3192.37
26. RPL7A ENSGALG00000003197 393.82 3170.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. EIF1 ENSGALG00000028517 389.66 3136.58 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
28. STMN1 ENSGALG00000001475 375.79 3024.94 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPL23 ENSGALG00000001634 371.63 2991.45 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPS3 ENSGALG00000017330 366.09 2946.86 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
31. CIRBP ENSGALG00000030918 360.54 2902.18 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. ENSGALG00000002696 ENSGALG00000002696 352.22 2835.21
33. TMSB4X ENSGALG00000026383 349.45 2812.91 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. MT-ND2 MT-ND2 334.19 2690.07
35. RPS27A ENSGALG00000036790 334.19 2690.07 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPL27A ENSGALG00000005948 331.42 2667.78 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. FKBP4 ENSGALG00000014331 316.17 2545.02 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
38. RPL7 ENSGALG00000035252 312.01 2511.54 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
39. RPS10 ENSGALG00000002813 312.01 2511.54 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
40. RPL31 ENSGALG00000016775 306.46 2466.86 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. RPS4 RPS4 299.53 2411.08
42. RPL18A 291.21 2344.11 ribosomal protein L18a
43. ENSGALG00000018384 ENSGALG00000018384 287.05 2310.62
44. ATP5G3 281.50 2265.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
45. RPS16 ENSGALG00000026490 274.57 2210.16 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. EEF1B2 ENSGALG00000008590 263.47 2120.81 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. EIF3F ENSGALG00000005326 257.93 2076.22 eukaryotic translation initiation factor 3 subunit F
48. ENSGALG00000028992 ENSGALG00000028992 252.38 2031.54
49. SNRPG ENSGALG00000028409 250.99 2020.35 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
50. ALDH1A2 ENSGALG00000004270 245.44 1975.68 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
51. RPS20 ENSGALG00000014432 245.44 1975.68 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
52. RPL35A ENSGALG00000007611, ENSGALG00000041230 244.06 1964.57 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
53. RAN ENSGALG00000002569 239.90 1931.08 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
54. SLC25A6_1 ENSGALG00000016691 239.90 1931.08 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
55. ERH ENSGALG00000017384 232.96 1875.22 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
56. RPS29 ENSGALG00000012229 232.96 1875.22 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. ENSGALG00000018386 ENSGALG00000018386 226.03 1819.44
58. HNRNPDL ENSGALG00000023199 226.03 1819.44 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
59. RPL10A ENSGALG00000002644 226.03 1819.44 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
60. TXN ENSGALG00000015704 226.03 1819.44 thioredoxin [Source:NCBI gene;Acc:396437]
61. RPS8 ENSGALG00000010124 223.26 1797.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
62. CRHOA CRHOA 221.87 1785.95
63. RPL37 ENSGALG00000014833 221.87 1785.95 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. RPS12 ENSGALG00000013990 221.87 1785.95 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
65. RPL38 ENSGALG00000001465 217.71 1752.46 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. RPS3A ENSGALG00000010077 213.55 1718.98 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
67. C5ORF13 C5ORF13 208.00 1674.30
68. H2AFZ ENSGALG00000014023 208.00 1674.30 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
69. NDUFB9 ENSGALG00000042242 208.00 1674.30 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
70. RPL32 ENSGALG00000027142 208.00 1674.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
71. ATP6V1G1 ENSGALG00000007190 206.62 1663.20 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
72. RPS24 ENSGALG00000004871 203.84 1640.82 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
73. TPT1 ENSGALG00000028872 202.46 1629.71 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
74. RPL21 ENSGALG00000027035 201.07 1618.52 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
75. H3-IX H3-IX 198.30 1596.22
76. ANP32B ENSGALG00000037483 195.52 1573.85 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
77. TCF12 ENSGALG00000004304 195.52 1573.85 transcription factor 12 [Source:NCBI gene;Acc:396334]
78. RPL3 ENSGALG00000012172 194.14 1562.74 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
79. RPS15A ENSGALG00000006771 194.14 1562.74 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
80. COX7C ENSGALG00000027963 192.75 1551.55 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
81. KPNA2 ENSGALG00000003584 192.75 1551.55 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
82. RPS11 ENSGALG00000017299 192.75 1551.55 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
83. CDK1 ENSGALG00000003085 191.36 1540.36 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
84. CRABP-I ENSGALG00000003193 191.36 1540.36 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
85. NONO ENSGALG00000005507 191.36 1540.36 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
86. RPL36 ENSGALG00000000474 191.36 1540.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
87. RPSA 191.36 1540.36 ribosomal protein SA
88. RPS14 ENSGALG00000004588 189.98 1529.25 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
89. BTF3L4 ENSGALG00000010570 188.59 1518.06 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
90. RPL27 ENSGALG00000002837 188.59 1518.06 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
91. RPL14 ENSGALG00000043379 187.20 1506.87 ribosomal protein L14
92. HMGN5 ENSGALG00000007131 181.66 1462.28 high mobility group nucleosome binding domain 5, transcript variant X1
93. RPLP1 ENSGALG00000030878 180.27 1451.09 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
94. HMGB1 ENSGALG00000042875 178.88 1439.90 high mobility group box 1 [Source:NCBI gene;Acc:395724]
95. MIF ENSGALG00000006326 176.11 1417.60 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
96. SNRPE ENSGALG00000000137 171.95 1384.12 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
97. RPS21 ENSGALG00000005338 169.18 1361.82 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
98. RPL23A ENSGALG00000003966 167.79 1350.63 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
99. RPL4 ENSGALG00000007711 166.40 1339.44 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
100. EIF4A3 ENSGALG00000008530 165.02 1328.33 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA