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Experiment Chicken_E3_anterior_slice_3, section s53.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5250.65 42262.44
2. MT-ND5 MT-ND5 4978.64 40073.03
3. MT-ATP6 MT-ATP6 4775.75 38439.97
4. MT-ND4 MT-ND4 2510.50 20206.99
5. MT-CYB MT-CYB 2410.17 19399.44
6. gga-mir-3527 gga-mir-3527 2390.11 19237.98
7. EEF1A EEF1A 1705.63 13728.60
8. MT-CO1 MT-CO1 1661.03 13369.62
9. gga-mir-3533 ENSGALG00000027736 1513.88 12185.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND1 MT-ND1 1346.66 10839.26
11. GAPDH ENSGALG00000014442 1235.19 9942.03 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 1226.27 9870.24
13. PPIA ENSGALG00000028600 1117.02 8990.88 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 807.11 6496.42 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MDK ENSGALG00000008367 744.68 5993.92 midkine [Source:NCBI gene;Acc:423196]
16. RPS23 ENSGALG00000015617 637.66 5132.52 ribosomal protein S23
17. RPL5 ENSGALG00000005922 573.00 4612.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS6 ENSGALG00000015082 503.88 4055.73 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. EIF4G2 ENSGALG00000005587 490.51 3948.11 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPS7 ENSGALG00000016392 461.52 3714.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPL7A ENSGALG00000003197 425.85 3427.66 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL8 ENSGALG00000016232 425.85 3427.66 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPL15 ENSGALG00000011290 416.93 3355.87 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. STMN1 ENSGALG00000001475 412.47 3319.97 stathmin 1 [Source:NCBI gene;Acc:396057]
25. RPL23 ENSGALG00000001634 410.24 3302.02 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. ENO1 ENSGALG00000002377 408.01 3284.07 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPL27A ENSGALG00000005948 408.01 3284.07 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS3 ENSGALG00000017330 401.32 3230.22 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
29. RPL26 RPL26 394.64 3176.45
30. TMSB4X ENSGALG00000026383 376.80 3032.86 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
31. RPL7 ENSGALG00000035252 365.65 2943.11 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. RPS27A ENSGALG00000036790 363.42 2925.16 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
33. ENSGALG00000002696 ENSGALG00000002696 361.19 2907.22
34. RPL31 ENSGALG00000016775 358.96 2889.27 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. ATP6V0C ENSGALG00000009229 347.81 2799.52 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. CRHOA CRHOA 343.35 2763.62
37. MT-ND2 MT-ND2 338.90 2727.80
38. RPS4 RPS4 329.98 2656.01
39. ENSGALG00000018384 ENSGALG00000018384 316.60 2548.31
40. CIRBP ENSGALG00000030918 314.37 2530.36 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
41. RPS10 ENSGALG00000002813 312.14 2512.41 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. MEIS2 ENSGALG00000039118 309.91 2494.46 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
43. RPS20 ENSGALG00000014432 307.68 2476.51 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. FKBP4 ENSGALG00000014331 294.30 2368.82 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
45. RPL18A 283.16 2279.15 ribosomal protein L18a
46. ALDH1A2 ENSGALG00000004270 280.93 2261.20 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
47. RPS16 ENSGALG00000026490 280.93 2261.20 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. SLC25A6_1 ENSGALG00000016691 274.24 2207.36 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
49. RPL36 ENSGALG00000000474 267.55 2153.51 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. EEF1B2 ENSGALG00000008590 254.17 2045.81 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. RPS14 ENSGALG00000004588 251.94 2027.86 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
52. EIF1 ENSGALG00000028517 245.25 1974.02 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
53. ANP32B ENSGALG00000037483 243.02 1956.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
54. NDUFB9 ENSGALG00000042242 243.02 1956.07 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
55. RPL35A ENSGALG00000007611, ENSGALG00000041230 240.79 1938.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
56. RPS29 ENSGALG00000012229 238.56 1920.17 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. ATP5G3 231.88 1866.40 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. RPL21 ENSGALG00000027035 231.88 1866.40 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RAN ENSGALG00000002569 229.65 1848.45 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
60. RPL32 ENSGALG00000027142 229.65 1848.45 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. RPS12 ENSGALG00000013990 229.65 1848.45 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. RPS24 ENSGALG00000004871 222.96 1794.60 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
63. ENSGALG00000018386 ENSGALG00000018386 220.73 1776.65
64. COX7C ENSGALG00000027963 218.50 1758.70 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
65. LDHB ENSGALG00000035836 218.50 1758.70 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. RPS8 ENSGALG00000010124 218.50 1758.70 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
67. C5ORF13 C5ORF13 214.04 1722.81
68. H3-IX H3-IX 214.04 1722.81
69. ERH ENSGALG00000017384 211.81 1704.86 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
70. RPL37 ENSGALG00000014833 209.58 1686.91 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
71. RPLP1 ENSGALG00000030878 205.12 1651.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
72. RPS11 ENSGALG00000017299 205.12 1651.01 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
73. RPL27 ENSGALG00000002837 202.89 1633.06 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
74. TPT1 ENSGALG00000028872 202.89 1633.06 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
75. ENSGALG00000028992 ENSGALG00000028992 200.66 1615.11
76. MT-ATP8 MT-ATP8 198.43 1597.16
77. RPL23A ENSGALG00000003966 198.43 1597.16 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
78. RPL38 ENSGALG00000001465 198.43 1597.16 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. SNRPG ENSGALG00000028409 198.43 1597.16 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
80. RPL10A ENSGALG00000002644 196.20 1579.21 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. SNRPE ENSGALG00000000137 191.74 1543.31 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
82. CRABP-I ENSGALG00000003193 189.51 1525.36 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
83. IGF2BP3 ENSGALG00000010961 189.51 1525.36 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. ATP6V1G1 ENSGALG00000007190 187.28 1507.42 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
85. HMGN5 ENSGALG00000007131 185.05 1489.47 high mobility group nucleosome binding domain 5, transcript variant X1
86. HNRNPDL ENSGALG00000023199 185.05 1489.47 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. BTF3L4 ENSGALG00000010570 182.83 1471.60 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. RPL14 ENSGALG00000043379 182.83 1471.60 ribosomal protein L14
89. RPSA 182.83 1471.60 ribosomal protein SA
90. TXN ENSGALG00000015704 182.83 1471.60 thioredoxin [Source:NCBI gene;Acc:396437]
91. RPS21 ENSGALG00000005338 180.60 1453.65 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
92. YWHAZ ENSGALG00000031387 178.37 1435.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
93. H2AFZ ENSGALG00000014023 176.14 1417.75 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
94. LUM ENSGALG00000011271 176.14 1417.75 lumican [Source:NCBI gene;Acc:417891]
95. RPS15A ENSGALG00000006771 176.14 1417.75 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
96. RPL12 ENSGALG00000008806 173.91 1399.80 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
97. TCEB3 ENSGALG00000034625 173.91 1399.80 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
98. KPNA2 ENSGALG00000003584 169.45 1363.90 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
99. ENSGALG00000028649 ENSGALG00000028649 167.22 1345.95
100. CDK1 ENSGALG00000003085 162.76 1310.05 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA