Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s34.

Sample reads: 124,229. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4600.50 37033.65
2. MT-CO3 MT-CO3 4381.87 35273.70
3. MT-ATP6 MT-ATP6 4031.13 32450.27
4. MT-CYB MT-CYB 2591.77 20863.54
5. gga-mir-3533 ENSGALG00000027736 2118.05 17050.13 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. gga-mir-3527 gga-mir-3527 2004.18 16133.49
7. MT-ND4 MT-ND4 1926.75 15510.18
8. EEF1A EEF1A 1703.55 13713.44
9. PPIA ENSGALG00000028600 1498.58 12063.45 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. MT-CO1 MT-CO1 1471.25 11843.44
11. GAPDH ENSGALG00000014442 1293.61 10413.46 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1243.50 10010.07
13. MT-ND3 MT-ND3 1129.63 9093.43
14. NME2 ENSGALG00000002932 829.00 6673.38 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 687.80 5536.73 ribosomal protein S23
16. RPL5 ENSGALG00000005922 683.24 5500.03 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. TMSB4X ENSGALG00000026383 592.14 4766.68 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. RPS6 ENSGALG00000015082 587.59 4730.05 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. MDK ENSGALG00000008367 555.70 4473.34 midkine [Source:NCBI gene;Acc:423196]
20. ENSGALG00000002696 ENSGALG00000002696 510.15 4106.67
21. RPL15 ENSGALG00000011290 469.16 3776.70 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. EIF4G2 ENSGALG00000005587 464.61 3740.07 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. STMN1 ENSGALG00000001475 460.05 3703.37 stathmin 1 [Source:NCBI gene;Acc:396057]
24. RPL18A 446.39 3593.40 ribosomal protein L18a
25. RPS7 ENSGALG00000016392 446.39 3593.40 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL26 RPL26 423.61 3410.03
27. RPL8 ENSGALG00000016232 419.06 3373.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. RPS10 ENSGALG00000002813 409.95 3300.06 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPL7A ENSGALG00000003197 405.39 3263.36 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPL7 ENSGALG00000035252 396.28 3190.02 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
31. ATP6V0C ENSGALG00000009229 391.73 3153.39 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
32. MT-ND2 MT-ND2 346.18 2786.72
33. RPL32 ENSGALG00000027142 346.18 2786.72 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. NDUFB9 ENSGALG00000042242 341.62 2750.01 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
35. RPL27A ENSGALG00000005948 337.07 2713.39 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPS27A ENSGALG00000036790 337.07 2713.39 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. SLC25A6_1 ENSGALG00000016691 337.07 2713.39 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
38. ATP5G3 323.40 2603.34 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
39. CIRBP ENSGALG00000030918 314.29 2530.01 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. ENSGALG00000028992 ENSGALG00000028992 314.29 2530.01
41. RPL23 ENSGALG00000001634 314.29 2530.01 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
42. RPL31 ENSGALG00000016775 309.74 2493.38 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. RPS4 RPS4 305.18 2456.67
44. ENO1 ENSGALG00000002377 296.07 2383.34 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
45. RPS16 ENSGALG00000026490 296.07 2383.34 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPS8 ENSGALG00000010124 296.07 2383.34 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
47. FKBP4 ENSGALG00000014331 268.74 2163.34 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
48. RPL35A ENSGALG00000007611, ENSGALG00000041230 268.74 2163.34 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
49. RPS11 ENSGALG00000017299 268.74 2163.34 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPS20 ENSGALG00000014432 268.74 2163.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
51. CRHOA CRHOA 264.19 2126.71
52. RPS3 ENSGALG00000017330 259.63 2090.00 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
53. LDHB ENSGALG00000035836 255.08 2053.37 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
54. RPLP1 ENSGALG00000030878 255.08 2053.37 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
55. RPS14 ENSGALG00000004588 255.08 2053.37 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. SNRPG ENSGALG00000028409 255.08 2053.37 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
57. ENSGALG00000018384 ENSGALG00000018384 250.52 2016.67
58. H3-IX H3-IX 245.97 1980.04
59. RPL10A ENSGALG00000002644 245.97 1980.04 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
60. PDIA6 ENSGALG00000016447 241.41 1943.33 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
61. RPS12 ENSGALG00000013990 241.41 1943.33 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. RPS15A ENSGALG00000006771 241.41 1943.33 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
63. EEF1B2 ENSGALG00000008590 236.86 1906.70 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
64. RAN ENSGALG00000002569 236.86 1906.70 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
65. RPS3A ENSGALG00000010077 236.86 1906.70 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. NONO ENSGALG00000005507 232.30 1870.00 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
67. RPL38 ENSGALG00000001465 232.30 1870.00 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
68. RPS29 ENSGALG00000012229 232.30 1870.00 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. RPL14 ENSGALG00000043379 218.64 1760.03 ribosomal protein L14
70. RPS15 ENSGALG00000015195 218.64 1760.03 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
71. ANP32B ENSGALG00000037483 214.08 1723.33 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. RPL37 ENSGALG00000014833 209.53 1686.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. RPS24 ENSGALG00000004871 209.53 1686.70 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. RPSA 209.53 1686.70 ribosomal protein SA
75. TXN ENSGALG00000015704 209.53 1686.70 thioredoxin [Source:NCBI gene;Acc:396437]
76. RPL12 ENSGALG00000008806 204.97 1649.99 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
77. EIF5A2 ENSGALG00000009309 200.42 1613.36 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
78. MEIS2 ENSGALG00000039118 200.42 1613.36 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
79. RPL27 ENSGALG00000002837 200.42 1613.36 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
80. MDH1 ENSGALG00000008858 195.86 1576.66 malate dehydrogenase 1 [Source:NCBI gene;Acc:421281]
81. RPL21 ENSGALG00000027035 195.86 1576.66 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
82. RPL36 ENSGALG00000000474 195.86 1576.66 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
83. TPT1 ENSGALG00000028872 195.86 1576.66 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
84. COX7C ENSGALG00000027963 191.31 1540.03 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
85. CRABP-I ENSGALG00000003193 191.31 1540.03 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
86. EIF1 ENSGALG00000028517 191.31 1540.03 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
87. RPL4 ENSGALG00000007711 191.31 1540.03 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
88. YWHAZ ENSGALG00000031387 191.31 1540.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
89. C5ORF13 C5ORF13 186.75 1503.32
90. CDC42 ENSGALG00000004796 186.75 1503.32 cell division cycle 42 [Source:NCBI gene;Acc:395917]
91. CDK1 ENSGALG00000003085 186.75 1503.32 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
92. MT-ND6 MT-ND6 186.75 1503.32
93. RPL23A ENSGALG00000003966 186.75 1503.32 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
94. RPL3 ENSGALG00000012172 186.75 1503.32 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
95. EIF3F ENSGALG00000005326 182.20 1466.70 eukaryotic translation initiation factor 3 subunit F
96. ENSGALG00000018386 ENSGALG00000018386 182.20 1466.70
97. KPNA2 ENSGALG00000003584 182.20 1466.70 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
98. ERH ENSGALG00000017384 177.64 1429.99 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
99. PRDX1 ENSGALG00000010243 177.64 1429.99 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
100. ACO2 ENSGALG00000011950 173.09 1393.36 aconitase 2 [Source:NCBI gene;Acc:374009]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA