Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s31.

Sample reads: 124,233. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5467.86 44014.57
2. MT-ATP6 MT-ATP6 4353.80 35046.73
3. MT-CYB MT-CYB 2600.14 20930.32
4. gga-mir-3527 gga-mir-3527 2220.17 17871.68
5. gga-mir-3533 ENSGALG00000027736 2027.20 16318.33 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-ND5 MT-ND5 1896.89 15269.37
7. MT-ND4 MT-ND4 1765.59 14212.45
8. EEF1A EEF1A 1754.65 14124.38
9. MT-CO1 MT-CO1 1614.40 12995.42
10. GAPDH ENSGALG00000014442 1242.38 10000.77 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND3 MT-ND3 1228.45 9888.64
12. PPIA ENSGALG00000028600 1199.61 9656.49 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND1 MT-ND1 1134.95 9135.99
14. NME2 ENSGALG00000002932 751.00 6045.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 736.08 5925.21 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 674.41 5428.79 ribosomal protein S23
17. RPS6 ENSGALG00000015082 540.12 4347.80 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL18A 517.24 4163.62 ribosomal protein L18a
19. TMSB4X ENSGALG00000026383 493.37 3971.47 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPS3 ENSGALG00000017330 492.38 3963.51 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL15 ENSGALG00000011290 489.39 3939.44 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL27A ENSGALG00000005948 489.39 3939.44 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPL8 ENSGALG00000016232 488.40 3931.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. ATP6V0C ENSGALG00000009229 483.42 3891.38 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. ENSGALG00000002696 ENSGALG00000002696 465.52 3747.29
26. RPS7 ENSGALG00000016392 454.58 3659.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. RPL7A ENSGALG00000003197 448.61 3611.17 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL7 ENSGALG00000035252 431.70 3475.05 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. EIF4G2 ENSGALG00000005587 415.78 3346.90 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
30. MDK ENSGALG00000008367 414.79 3338.93 midkine [Source:NCBI gene;Acc:423196]
31. STMN1 ENSGALG00000001475 409.82 3298.92 stathmin 1 [Source:NCBI gene;Acc:396057]
32. RPS10 ENSGALG00000002813 385.94 3106.70 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
33. RPL26 RPL26 370.03 2978.63
34. RPS27A ENSGALG00000036790 369.03 2970.58 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. MT-ND2 MT-ND2 363.07 2922.60
36. RPL31 ENSGALG00000016775 362.07 2914.55 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RPL23 ENSGALG00000001634 359.09 2890.56 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. CIRBP ENSGALG00000030918 355.11 2858.52 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. RPL21 ENSGALG00000027035 338.20 2722.40 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPS4 RPS4 335.21 2698.34
41. ENO1 ENSGALG00000002377 323.28 2602.30 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
42. RPS11 ENSGALG00000017299 309.35 2490.17 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. SLC25A6_1 ENSGALG00000016691 308.36 2482.20 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
44. RPS20 ENSGALG00000014432 306.37 2466.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
45. NDUFB9 ENSGALG00000042242 293.44 2362.10 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
46. RPS15 ENSGALG00000015195 288.46 2322.01 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
47. RPS16 ENSGALG00000026490 287.47 2314.04 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPL27 ENSGALG00000002837 282.49 2273.96 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. H3-IX H3-IX 274.54 2209.96
50. RPSA 272.55 2193.94 ribosomal protein SA
51. ATP5G3 271.55 2185.89 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
52. CRHOA CRHOA 270.56 2177.92
53. RPS8 ENSGALG00000010124 263.60 2121.90 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
54. RPS14 ENSGALG00000004588 262.60 2113.85 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
55. ANP32B ENSGALG00000037483 254.64 2049.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. RAN ENSGALG00000002569 251.66 2025.78 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
57. RPL32 ENSGALG00000027142 251.66 2025.78 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. RPL35A ENSGALG00000007611, ENSGALG00000041230 249.67 2009.77 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
59. RPL36 ENSGALG00000000474 249.67 2009.77 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
60. RPS24 ENSGALG00000004871 249.67 2009.77 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
61. EEF1B2 ENSGALG00000008590 246.69 1985.78 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
62. EIF1 ENSGALG00000028517 245.69 1977.73 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
63. ENSGALG00000028992 ENSGALG00000028992 245.69 1977.73
64. SNRPG ENSGALG00000028409 243.70 1961.71 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
65. FKBP4 ENSGALG00000014331 241.71 1945.69 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
66. RPLP1 ENSGALG00000030878 237.73 1913.65 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
67. RPS12 ENSGALG00000013990 236.74 1905.68 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
68. RPL14 ENSGALG00000043379 234.75 1889.66 ribosomal protein L14
69. RPS29 ENSGALG00000012229 233.75 1881.61 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
70. HMGN5 ENSGALG00000007131 231.76 1865.60 high mobility group nucleosome binding domain 5, transcript variant X1
71. TXN ENSGALG00000015704 227.79 1833.64 thioredoxin [Source:NCBI gene;Acc:396437]
72. RPL10A ENSGALG00000002644 224.80 1809.57 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
73. RPS15A ENSGALG00000006771 222.81 1793.55 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
74. ENSGALG00000018384 ENSGALG00000018384 221.82 1785.58
75. ACTC1 ENSGALG00000009844 220.82 1777.53 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
76. MIF ENSGALG00000006326 216.84 1745.49 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
77. H2AFZ ENSGALG00000014023 211.87 1705.49 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
78. EIF3F ENSGALG00000005326 209.88 1689.47 eukaryotic translation initiation factor 3 subunit F
79. HNRNPA3 ENSGALG00000009250 208.89 1681.50 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
80. IGF2BP3 ENSGALG00000010961 207.89 1673.45 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
81. RPL12 ENSGALG00000008806 202.92 1633.44 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
82. RPL38 ENSGALG00000001465 202.92 1633.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
83. RPL3 ENSGALG00000012172 200.93 1617.42 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
84. C5ORF13 C5ORF13 199.93 1609.37
85. LDHB ENSGALG00000035836 199.93 1609.37 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
86. RPL4 ENSGALG00000007711 197.95 1593.44 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
87. ERH ENSGALG00000017384 196.95 1585.39 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
88. LUM ENSGALG00000011271 195.96 1577.42 lumican [Source:NCBI gene;Acc:417891]
89. EEF1D 191.98 1545.38 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. RPL37 ENSGALG00000014833 189.99 1529.36 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
91. RPL23A ENSGALG00000003966 188.00 1513.34 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
92. RPS3A ENSGALG00000010077 185.01 1489.27 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
93. SNRPE ENSGALG00000000137 185.01 1489.27 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
94. KPNA2 ENSGALG00000003584 182.03 1465.28 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
95. CRABP-I ENSGALG00000003193 181.04 1457.32 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
96. HNRNPDL ENSGALG00000023199 177.06 1425.28 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
97. PRDX1 ENSGALG00000010243 177.06 1425.28 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. NONO ENSGALG00000005507 175.07 1409.26 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
99. MT-ND6 MT-ND6 172.08 1385.19
100. TPT1 ENSGALG00000028872 172.08 1385.19 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA