Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s17.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 8255.94 66451.18
2. MT-CO3 MT-CO3 5153.36 41478.85
3. MT-ND4 MT-ND4 4944.38 39796.79
4. MT-ND5 MT-ND5 4225.57 34011.16
5. MT-CYB MT-CYB 3217.40 25896.51
6. gga-mir-3527 gga-mir-3527 2604.24 20961.25
7. MT-ND1 MT-ND1 2330.95 18761.57
8. MT-CO1 MT-CO1 1997.96 16081.37
9. EEF1A EEF1A 1761.42 14177.48
10. MT-ND3 MT-ND3 1545.55 12439.97
11. PPIA ENSGALG00000028600 1178.11 9482.48 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. GAPDH ENSGALG00000014442 1060.99 8539.80 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPL5 ENSGALG00000005922 877.26 7060.97 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
14. NME2 ENSGALG00000002932 824.45 6635.91 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 620.06 4990.80 ribosomal protein S23
16. RPS7 ENSGALG00000016392 615.46 4953.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
17. gga-mir-3533 ENSGALG00000027736 491.45 3955.63 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
18. RPL31 ENSGALG00000016775 489.16 3937.20 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
19. ENO1 ENSGALG00000002377 470.78 3789.26 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. EIF4G2 ENSGALG00000005587 443.23 3567.51 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. MT-ND2 MT-ND2 434.04 3493.54
22. LDHB ENSGALG00000035836 424.85 3419.57 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
23. CIRBP ENSGALG00000030918 422.56 3401.14 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. ENSGALG00000002696 ENSGALG00000002696 420.26 3382.63
25. STMN1 ENSGALG00000001475 420.26 3382.63 stathmin 1 [Source:NCBI gene;Acc:396057]
26. CRABP-I ENSGALG00000003193 415.67 3345.68 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
27. RPL15 ENSGALG00000011290 413.37 3327.17 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RPLP1 ENSGALG00000030878 413.37 3327.17 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
29. FKBP4 ENSGALG00000014331 378.92 3049.89 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
30. RPL18A 372.03 2994.43 ribosomal protein L18a
31. RPS12 ENSGALG00000013990 358.25 2883.52 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
32. HNRNPDL ENSGALG00000023199 342.18 2754.17 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
33. RPS6 ENSGALG00000015082 342.18 2754.17 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. RPL38 ENSGALG00000001465 337.59 2717.23 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
35. RPL27A ENSGALG00000005948 330.70 2661.77 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPL36 ENSGALG00000000474 321.51 2587.80 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
37. COX7C ENSGALG00000027963 319.21 2569.29 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
38. SNRPG ENSGALG00000028409 314.62 2532.34 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
39. RPL23 ENSGALG00000001634 307.73 2476.89 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
40. RPL32 ENSGALG00000027142 305.44 2458.45 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
41. RPL7A ENSGALG00000003197 303.14 2439.94 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. RPS20 ENSGALG00000014432 289.36 2329.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. RPS27A ENSGALG00000036790 289.36 2329.03 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
44. RPS29 ENSGALG00000012229 289.36 2329.03 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. RPS3 ENSGALG00000017330 287.06 2310.52 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
46. EEF1B2 ENSGALG00000008590 277.88 2236.63 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. RPL37 ENSGALG00000014833 273.28 2199.60 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. RPS11 ENSGALG00000017299 268.69 2162.66 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPL14 ENSGALG00000043379 266.39 2144.14 ribosomal protein L14
50. RPL8 ENSGALG00000016232 266.39 2144.14 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
51. HNRNPA3 ENSGALG00000009250 259.51 2088.77 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
52. RAN ENSGALG00000002569 254.91 2051.74 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
53. RPL35A ENSGALG00000007611, ENSGALG00000041230 250.32 2014.80 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
54. RPS15A ENSGALG00000006771 250.32 2014.80 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
55. RPS4 RPS4 250.32 2014.80
56. RPL29 ENSGALG00000026978 248.02 1996.29 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
57. RPS8 ENSGALG00000010124 245.73 1977.85 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
58. KPNA2 ENSGALG00000003584 243.43 1959.34 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
59. TXN ENSGALG00000015704 243.43 1959.34 thioredoxin [Source:NCBI gene;Acc:396437]
60. ATP6V0C ENSGALG00000009229 238.84 1922.40 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
61. ENSGALG00000028992 ENSGALG00000028992 238.84 1922.40
62. ACTC1 ENSGALG00000009844 234.24 1885.37 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
63. RPL7 ENSGALG00000035252 234.24 1885.37 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
64. H2AFZ ENSGALG00000014023 227.35 1829.92 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
65. RPL26 RPL26 227.35 1829.92
66. RPS16 ENSGALG00000026490 227.35 1829.92 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
67. RPS14 ENSGALG00000004588 225.06 1811.48 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. ATP5G3 218.17 1756.03 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
69. MIF ENSGALG00000006326 213.57 1719.00 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
70. NDUFB9 ENSGALG00000042242 211.28 1700.57 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
71. RPS10 ENSGALG00000002813 211.28 1700.57 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
72. EIF1 ENSGALG00000028517 208.98 1682.06 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
73. CRHOA CRHOA 206.69 1663.63
74. BTF3L4 ENSGALG00000010570 202.09 1626.60 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. RPS21 ENSGALG00000005338 202.09 1626.60 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
76. RPL27 ENSGALG00000002837 197.50 1589.66 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
77. RPS24 ENSGALG00000004871 197.50 1589.66 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
78. SLC25A6_1 ENSGALG00000016691 195.20 1571.14 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
79. H3-IX H3-IX 186.02 1497.26
80. RPL23A ENSGALG00000003966 186.02 1497.26 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
81. SNRPE ENSGALG00000000137 183.72 1478.74 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
82. HSPE1 ENSGALG00000009070 181.42 1460.23 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
83. MDK ENSGALG00000008367 181.42 1460.23 midkine [Source:NCBI gene;Acc:423196]
84. RPL21 ENSGALG00000027035 181.42 1460.23 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
85. CCNB2 ENSGALG00000004161 179.13 1441.80 cyclin B2 [Source:NCBI gene;Acc:415400]
86. COX6C ENSGALG00000035996 179.13 1441.80 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
87. EIF4A3 ENSGALG00000008530 174.53 1404.77 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
88. RRM1 ENSGALG00000017350 174.53 1404.77 ribonucleotide reductase catalytic subunit M1 [Source:NCBI gene;Acc:419081]
89. HMGB1 ENSGALG00000042875 172.24 1386.34 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. RPL12 ENSGALG00000008806 167.64 1349.32 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
91. TCEB3 ENSGALG00000034625 167.64 1349.32 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
92. ENSGALG00000018384 ENSGALG00000018384 163.05 1312.37
93. HMGN5 ENSGALG00000007131 163.05 1312.37 high mobility group nucleosome binding domain 5, transcript variant X1
94. CCT6 CCT6 160.76 1293.94
95. GNB1 ENSGALG00000001334 160.76 1293.94 G protein subunit beta 1 [Source:NCBI gene;Acc:419402]
96. RPL36AL ENSGALG00000004952 158.46 1275.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
97. RPL37A ENSGALG00000011472 156.16 1256.92 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
98. PDIA6 ENSGALG00000016447 151.57 1219.97 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
99. CDK1 ENSGALG00000003085 146.98 1183.03 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
100. COX6A1 ENSGALG00000007205 146.98 1183.03 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA