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Experiment Chicken_E3_anterior_slice_3, section s11.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6095.09 49057.50
2. MT-CO3 MT-CO3 5018.78 40394.61
3. MT-ND5 MT-ND5 4228.67 34035.26
4. MT-CYB MT-CYB 2282.64 18372.27
5. gga-mir-3527 gga-mir-3527 1979.29 15930.70
6. MT-ND4 MT-ND4 1774.71 14284.09
7. MT-CO1 MT-CO1 1766.65 14219.22
8. EEF1A EEF1A 1614.47 12994.37
9. GAPDH ENSGALG00000014442 1473.38 11858.78 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND1 MT-ND1 1456.25 11720.91
11. gga-mir-3533 ENSGALG00000027736 1372.61 11047.72 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1238.57 9968.87
13. PPIA ENSGALG00000028600 1123.68 9044.15 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 898.95 7235.37 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 740.72 5961.83 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 674.21 5426.51 ribosomal protein S23
17. CRABP-I ENSGALG00000003193 607.70 4891.19 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
18. RPS6 ENSGALG00000015082 596.61 4801.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. ENO1 ENSGALG00000002377 529.09 4258.48 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. TMSB4X ENSGALG00000026383 518.00 4169.22 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. EIF4G2 ENSGALG00000005587 507.92 4088.09 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
22. STMN1 ENSGALG00000001475 486.76 3917.78 stathmin 1 [Source:NCBI gene;Acc:396057]
23. ATP6V0C ENSGALG00000009229 481.72 3877.22 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. MDK ENSGALG00000008367 475.68 3828.60 midkine [Source:NCBI gene;Acc:423196]
25. CIRBP ENSGALG00000030918 465.60 3747.47 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. RPS3 ENSGALG00000017330 441.41 3552.77 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
27. RPL8 ENSGALG00000016232 438.39 3528.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. RPL15 ENSGALG00000011290 426.29 3431.08 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. RPS7 ENSGALG00000016392 395.05 3179.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
30. RPL7A ENSGALG00000003197 385.98 3106.63 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. ENSGALG00000002696 ENSGALG00000002696 357.76 2879.50
32. RPL26 RPL26 344.66 2774.06
33. RPL18A 341.64 2749.76 ribosomal protein L18a
34. RPS27A ENSGALG00000036790 329.55 2652.45 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. RPS4 RPS4 326.52 2628.06
36. RPL7 ENSGALG00000035252 325.52 2620.01 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
37. RPL23 ENSGALG00000001634 321.48 2587.49 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. RPL31 ENSGALG00000016775 308.38 2482.06 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. LDHB ENSGALG00000035836 293.27 2360.44 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
40. MT-ND2 MT-ND2 289.23 2327.92
41. RAN ENSGALG00000002569 284.20 2287.44 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
42. RPS15 ENSGALG00000015195 280.16 2254.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. EEF1B2 ENSGALG00000008590 268.07 2157.61 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. RPS10 ENSGALG00000002813 267.06 2149.48 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
45. RPL27A ENSGALG00000005948 266.06 2141.43 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
46. RPL35A ENSGALG00000007611, ENSGALG00000041230 264.04 2125.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
47. RPS16 ENSGALG00000026490 263.03 2117.05 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. SLC25A6_1 ENSGALG00000016691 260.01 2092.74 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
49. ANP32B ENSGALG00000037483 255.98 2060.30 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
50. ERH ENSGALG00000017384 246.91 1987.30 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
51. RPL32 ENSGALG00000027142 244.89 1971.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS11 ENSGALG00000017299 243.88 1962.92 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. SNRPG ENSGALG00000028409 243.88 1962.92 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. EIF1 ENSGALG00000028517 242.88 1954.87 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
55. H3-IX H3-IX 242.88 1954.87
56. H2AFZ ENSGALG00000014023 241.87 1946.74 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
57. RPL21 ENSGALG00000027035 241.87 1946.74 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. CRHOA CRHOA 239.85 1930.48
59. RPS20 ENSGALG00000014432 239.85 1930.48 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
60. SNRPE ENSGALG00000000137 236.83 1906.17 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
61. EIF3F ENSGALG00000005326 233.81 1881.86 eukaryotic translation initiation factor 3 subunit F
62. RPS12 ENSGALG00000013990 230.78 1857.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
63. BTF3L4 ENSGALG00000010570 227.76 1833.17 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
64. HNRNPDL ENSGALG00000023199 227.76 1833.17 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
65. RPL37 ENSGALG00000014833 227.76 1833.17 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. ENSGALG00000028992 ENSGALG00000028992 225.74 1816.91
67. HMGN5 ENSGALG00000007131 224.74 1808.86 high mobility group nucleosome binding domain 5, transcript variant X1
68. ATP5G3 223.73 1800.73 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
69. RPSA 223.73 1800.73 ribosomal protein SA
70. NDUFB9 ENSGALG00000042242 217.68 1752.04 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
71. RPS24 ENSGALG00000004871 213.65 1719.60 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
72. HNRNPA3 ENSGALG00000009250 210.63 1695.30 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
73. RPS8 ENSGALG00000010124 210.63 1695.30 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
74. TXN ENSGALG00000015704 206.60 1662.86 thioredoxin [Source:NCBI gene;Acc:396437]
75. KPNA2 ENSGALG00000003584 203.57 1638.47 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
76. RPL12 ENSGALG00000008806 203.57 1638.47 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
77. RPL36 ENSGALG00000000474 199.54 1606.04 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. MEIS2 ENSGALG00000039118 196.52 1581.73 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
79. RPS14 ENSGALG00000004588 196.52 1581.73 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
80. FKBP4 ENSGALG00000014331 195.51 1573.60 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
81. ENSGALG00000018384 ENSGALG00000018384 192.49 1549.29
82. ENSGALG00000018386 ENSGALG00000018386 192.49 1549.29
83. RPLP1 ENSGALG00000030878 190.47 1533.03 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
84. MIF ENSGALG00000006326 188.46 1516.86 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
85. MT-ND6 MT-ND6 186.44 1500.60
86. RPL23A ENSGALG00000003966 186.44 1500.60 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
87. RPL10A ENSGALG00000002644 179.39 1443.85 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. RPS15A ENSGALG00000006771 179.39 1443.85 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
89. HMGB1 ENSGALG00000042875 177.37 1427.60 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. IGF2BP3 ENSGALG00000010961 176.36 1419.47 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
91. NONO ENSGALG00000005507 174.35 1403.29 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
92. RPL3 ENSGALG00000012172 172.33 1387.03 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. RPS29 ENSGALG00000012229 172.33 1387.03 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
94. PNRC1 ENSGALG00000015780 170.32 1370.85 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
95. RPL38 ENSGALG00000001465 170.32 1370.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
96. RPL27 ENSGALG00000002837 169.31 1362.72 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
97. TCEB3 ENSGALG00000034625 167.29 1346.47 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
98. EIF5A2 ENSGALG00000009309 166.28 1338.34 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
99. TCF12 ENSGALG00000004304 166.28 1338.34 transcription factor 12 [Source:NCBI gene;Acc:396334]
100. RPS3A ENSGALG00000010077 165.28 1330.29 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA