Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s70.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3709.62 29857.96
2. MT-ND5 MT-ND5 3493.86 28121.35
3. MT-ATP6 MT-ATP6 2484.68 19998.67
4. gga-mir-3527 gga-mir-3527 2261.96 18206.05
5. MT-CYB MT-CYB 1879.17 15125.05
6. EEF1A EEF1A 1600.77 12884.27
7. MT-CO1 MT-CO1 1586.85 12772.23
8. MT-ND4 MT-ND4 1572.93 12660.19
9. MT-ND1 MT-ND1 1524.21 12268.05
10. GAPDH ENSGALG00000014442 1440.70 11595.90 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. gga-mir-3533 ENSGALG00000027736 1343.26 10811.62 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. ENSGALG00000018384 ENSGALG00000018384 1294.54 10419.48
13. MT-ND3 MT-ND3 1162.30 9355.11
14. NME2 ENSGALG00000002932 1030.06 8290.74 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. PPIA ENSGALG00000028600 869.99 7002.37 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. ENO1 ENSGALG00000002377 800.39 6442.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. RPL5 ENSGALG00000005922 744.71 5994.02 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL7 ENSGALG00000035252 563.75 4537.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
19. RPL8 ENSGALG00000016232 549.83 4425.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. ENSGALG00000018386 ENSGALG00000018386 515.03 4145.37
21. MT-ND2 MT-ND2 508.07 4089.35
22. RPS3 ENSGALG00000017330 501.11 4033.33 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPS10 ENSGALG00000002813 452.39 3641.19 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
24. RPL23 ENSGALG00000001634 403.67 3249.06 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL27A ENSGALG00000005948 403.67 3249.06 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. EIF4G2 ENSGALG00000005587 389.75 3137.02 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
27. RPL27 ENSGALG00000002837 389.75 3137.02 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
28. RPS4 RPS4 389.75 3137.02
29. MDK ENSGALG00000008367 382.79 3081.00 midkine [Source:NCBI gene;Acc:423196]
30. RPL26 RPL26 375.83 3024.98
31. RPS7 ENSGALG00000016392 361.91 2912.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. H3-IX H3-IX 354.95 2856.92
33. RPS6 ENSGALG00000015082 354.95 2856.92 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. EEF1B2 ENSGALG00000008590 347.99 2800.90 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
35. RPL21 ENSGALG00000027035 347.99 2800.90 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
36. RPL15 ENSGALG00000011290 334.07 2688.86 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
37. RPS11 ENSGALG00000017299 334.07 2688.86 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. CIRBP ENSGALG00000030918 320.15 2576.82 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. RAN ENSGALG00000002569 313.19 2520.80 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. TMSB4X ENSGALG00000026383 313.19 2520.80 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
41. RPL18A 306.23 2464.78 ribosomal protein L18a
42. ATP6V0C ENSGALG00000009229 299.28 2408.84 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
43. RPL31 ENSGALG00000016775 299.28 2408.84 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
44. RPL6 ENSGALG00000004818 299.28 2408.84 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
45. RPL7A ENSGALG00000003197 299.28 2408.84 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
46. SLC25A6_1 ENSGALG00000016691 292.32 2352.82 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. RPL32 ENSGALG00000027142 285.36 2296.80 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPL36 ENSGALG00000000474 285.36 2296.80 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. RPS20 ENSGALG00000014432 285.36 2296.80 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
50. RPS24 ENSGALG00000004871 278.40 2240.78 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
51. RPS23 ENSGALG00000015617 271.44 2184.76 ribosomal protein S23
52. RPSA 271.44 2184.76 ribosomal protein SA
53. ATP5G3 264.48 2128.74 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. RPL14 ENSGALG00000043379 264.48 2128.74 ribosomal protein L14
55. RPS29 ENSGALG00000012229 257.52 2072.73 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
56. FKBP4 ENSGALG00000014331 250.56 2016.71 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
57. H2AFZ ENSGALG00000014023 250.56 2016.71 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
58. HMGN5 ENSGALG00000007131 250.56 2016.71 high mobility group nucleosome binding domain 5, transcript variant X1
59. RPL10A ENSGALG00000002644 250.56 2016.71 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
60. RPL13 ENSGALG00000006179 250.56 2016.71 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
61. STMN1 ENSGALG00000001475 250.56 2016.71 stathmin 1 [Source:NCBI gene;Acc:396057]
62. RPL35A ENSGALG00000007611, ENSGALG00000041230 243.60 1960.69 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
63. RPS15A ENSGALG00000006771 236.64 1904.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
64. RPS3A ENSGALG00000010077 236.64 1904.67 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
65. EIF5A2 ENSGALG00000009309 229.68 1848.65 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
66. TCEB3 ENSGALG00000034625 229.68 1848.65 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. CRHOA CRHOA 222.72 1792.63
68. EIF1 ENSGALG00000028517 215.76 1736.61 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
69. RPL23A ENSGALG00000003966 215.76 1736.61 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
70. RPL4 ENSGALG00000007711 215.76 1736.61 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
71. SNRPG ENSGALG00000028409 215.76 1736.61 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
72. RPS14 ENSGALG00000004588 208.80 1680.59 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. ENSGALG00000028992 ENSGALG00000028992 201.84 1624.57
74. RPL38 ENSGALG00000001465 201.84 1624.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. RPS27A ENSGALG00000036790 201.84 1624.57 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
76. ENSGALG00000002696 ENSGALG00000002696 194.88 1568.55
77. LDHB ENSGALG00000035836 194.88 1568.55 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
78. RPLP1 ENSGALG00000030878 194.88 1568.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
79. RPS12 ENSGALG00000013990 187.92 1512.53 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
80. RPS15 ENSGALG00000015195 187.92 1512.53 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
81. SLC25A6 ENSGALG00000016691 187.92 1512.53 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
82. TPT1 ENSGALG00000028872 187.92 1512.53 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
83. CALM CALM 180.96 1456.51
84. EEF1D 180.96 1456.51 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. EIF3F ENSGALG00000005326 180.96 1456.51 eukaryotic translation initiation factor 3 subunit F
86. HSP90B1 ENSGALG00000033789 180.96 1456.51 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
87. MDH1 ENSGALG00000008858 180.96 1456.51 malate dehydrogenase 1 [Source:NCBI gene;Acc:421281]
88. PSME3 ENSGALG00000002937 180.96 1456.51 proteasome activator subunit 3 [Source:NCBI gene;Acc:420017]
89. RPL3 ENSGALG00000012172 180.96 1456.51 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
90. RPS16 ENSGALG00000026490 180.96 1456.51 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
91. HMGB1 ENSGALG00000042875 174.00 1400.49 high mobility group box 1 [Source:NCBI gene;Acc:395724]
92. HNRNPDL ENSGALG00000023199 174.00 1400.49 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. RPLP2 ENSGALG00000034811 174.00 1400.49 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. SET ENSGALG00000004701 174.00 1400.49 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
95. SNRPE ENSGALG00000000137 174.00 1400.49 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
96. gga-mir-3526 ENSGALG00000029121 174.00 1400.49 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
97. EIF4A2 ENSGALG00000008684 167.04 1344.47 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
98. NDUFB9 ENSGALG00000042242 167.04 1344.47 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
99. HSP90AB1 ENSGALG00000010175 160.08 1288.45 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
100. PTBP1 ENSGALG00000001962 160.08 1288.45 polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA