Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s68.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3997.74 32177.97
2. MT-ND5 MT-ND5 2341.80 18849.24
3. EEF1A EEF1A 2141.91 17240.32
4. gga-mir-3527 gga-mir-3527 1967.70 15838.10
5. MT-ATP6 MT-ATP6 1893.43 15240.29
6. MT-CO1 MT-CO1 1861.34 14982.00
7. MT-CYB MT-CYB 1806.32 14539.14
8. GAPDH ENSGALG00000014442 1661.45 13373.08 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND4 MT-ND4 1471.65 11845.37
10. MT-ND1 MT-ND1 1324.94 10664.49
11. gga-mir-3533 ENSGALG00000027736 1176.40 9468.89 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1059.04 8524.26
13. NME2 ENSGALG00000002932 895.82 7210.49 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPL5 ENSGALG00000005922 786.71 6332.26 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. PPIA ENSGALG00000028600 707.86 5697.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. ENO1 ENSGALG00000002377 693.19 5579.51 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. ENSGALG00000018384 ENSGALG00000018384 630.84 5077.66
18. RPS3 ENSGALG00000017330 600.58 4834.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL8 ENSGALG00000016232 596.91 4804.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL26 RPL26 552.90 4450.31
21. RPL23 ENSGALG00000001634 531.81 4280.56 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
22. RPL7 ENSGALG00000035252 515.31 4147.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPL7A ENSGALG00000003197 476.80 3837.78 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPS10 ENSGALG00000002813 463.96 3734.43 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
25. RPS7 ENSGALG00000016392 445.62 3586.81 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL15 ENSGALG00000011290 435.53 3505.60 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. TMSB4X ENSGALG00000026383 431.87 3476.14 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
28. RPS4 RPS4 419.03 3372.79
29. RPL27 ENSGALG00000002837 408.94 3291.57 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPL27A ENSGALG00000005948 405.28 3262.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. MDK ENSGALG00000008367 394.27 3173.49 midkine [Source:NCBI gene;Acc:423196]
32. CIRBP ENSGALG00000030918 378.69 3048.09 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. H3-IX H3-IX 375.02 3018.55
34. RPS23 ENSGALG00000015617 358.51 2885.66 ribosomal protein S23
35. ENSGALG00000018386 ENSGALG00000018386 357.60 2878.34
36. RPSA 355.76 2863.53 ribosomal protein SA
37. RPL21 ENSGALG00000027035 347.51 2797.12 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
38. RPL31 ENSGALG00000016775 344.76 2774.99 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. RPS20 ENSGALG00000014432 344.76 2774.99 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPS24 ENSGALG00000004871 344.76 2774.99 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
41. RAN ENSGALG00000002569 342.01 2752.85 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
42. RPS11 ENSGALG00000017299 333.76 2686.45 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. MT-ND2 MT-ND2 332.84 2679.04
44. STMN1 ENSGALG00000001475 331.92 2671.64 stathmin 1 [Source:NCBI gene;Acc:396057]
45. RPS6 ENSGALG00000015082 328.26 2642.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. EIF4G2 ENSGALG00000005587 327.34 2634.77 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
47. EEF1B2 ENSGALG00000008590 320.00 2575.69 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPS16 ENSGALG00000026490 304.42 2450.29 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. SLC25A6_1 ENSGALG00000016691 301.66 2428.07 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
50. RPS27A ENSGALG00000036790 296.16 2383.80 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. RPL32 ENSGALG00000027142 290.66 2339.53 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS3A ENSGALG00000010077 286.99 2309.99 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
53. RPL18A 285.16 2295.26 ribosomal protein L18a
54. gga-mir-3526 ENSGALG00000029121 284.24 2287.86 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
55. ATP6V0C ENSGALG00000009229 275.99 2221.45 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
56. RPL6 ENSGALG00000004818 271.41 2184.59 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. RPL14 ENSGALG00000043379 266.82 2147.64 ribosomal protein L14
58. RPL13 ENSGALG00000006179 260.40 2095.97 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
59. RPS29 ENSGALG00000012229 259.49 2088.65 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
60. RPS15A ENSGALG00000006771 257.65 2073.84 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. LDHB ENSGALG00000035836 251.23 2022.16 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
62. ATP5G3 250.32 2014.84 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. RPL23A ENSGALG00000003966 249.40 2007.43 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
64. SNRPG ENSGALG00000028409 244.82 1970.57 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
65. HNRNPDL ENSGALG00000023199 243.90 1963.16 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
66. HMGN5 ENSGALG00000007131 242.07 1948.43 high mobility group nucleosome binding domain 5, transcript variant X1
67. CRHOA CRHOA 238.40 1918.89
68. RPL35A ENSGALG00000007611, ENSGALG00000041230 234.73 1889.35 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
69. FKBP4 ENSGALG00000014331 233.81 1881.95 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
70. EIF1 ENSGALG00000028517 231.98 1867.22 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
71. RPL4 ENSGALG00000007711 231.06 1859.81 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
72. ENSGALG00000028992 ENSGALG00000028992 230.15 1852.49
73. RPS14 ENSGALG00000004588 226.48 1822.95 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. RPLP1 ENSGALG00000030878 217.31 1749.14 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
75. ENSGALG00000002696 ENSGALG00000002696 215.47 1734.33
76. RPL36 ENSGALG00000000474 206.31 1660.60 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
77. RPS12 ENSGALG00000013990 204.47 1645.79 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
78. MEIS2 ENSGALG00000039118 195.30 1571.98 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
79. RPL10A ENSGALG00000002644 194.39 1564.65 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. TPT1 ENSGALG00000028872 194.39 1564.65 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
81. H2AFZ ENSGALG00000014023 191.64 1542.52 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
82. PRDX1 ENSGALG00000010243 187.97 1512.98 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
83. TCEB3 ENSGALG00000034625 187.97 1512.98 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
84. HSPA8 ENSGALG00000006512 187.05 1505.57 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
85. ANP32B ENSGALG00000037483 178.80 1439.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. RPS8 ENSGALG00000010124 178.80 1439.17 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
87. MIF ENSGALG00000006326 177.88 1431.76 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
88. RPS15 ENSGALG00000015195 176.96 1424.36 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
89. RPL3 ENSGALG00000012172 176.05 1417.03 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
90. RPL9 ENSGALG00000000150 172.38 1387.49 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. EIF5A2 ENSGALG00000009309 171.46 1380.09 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
92. BTF3L4 ENSGALG00000010570 170.55 1372.76 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
93. KPNA2 ENSGALG00000003584 169.63 1365.36 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
94. RPL38 ENSGALG00000001465 169.63 1365.36 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
95. RPS21 ENSGALG00000005338 169.63 1365.36 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
96. EIF4A2 ENSGALG00000008684 168.71 1357.95 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
97. CALM CALM 165.96 1335.82
98. RPL19 ENSGALG00000001658 165.96 1335.82 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
99. RPL35 ENSGALG00000035677 165.04 1328.41 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
100. RPLP2 ENSGALG00000034811 164.13 1321.09 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA