Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s66.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3508.85 28250.32
2. MT-ND5 MT-ND5 3349.84 26970.11
3. gga-mir-3527 gga-mir-3527 2268.56 18264.54
4. MT-ATP6 MT-ATP6 2247.36 18093.86
5. EEF1A EEF1A 1802.13 14509.24
6. MT-CYB MT-CYB 1727.92 13911.76
7. MT-CO1 MT-CO1 1664.32 13399.71
8. MT-ND1 MT-ND1 1568.91 12631.55
9. MT-ND4 MT-ND4 1537.11 12375.52
10. MT-ND3 MT-ND3 1441.70 11607.36
11. gga-mir-3533 ENSGALG00000027736 1388.70 11180.65 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1219.09 9815.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 837.46 6742.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 805.66 6486.50 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. ENSGALG00000018384 ENSGALG00000018384 795.06 6401.16
16. RPL5 ENSGALG00000005922 784.46 6315.81 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. ENO1 ENSGALG00000002377 604.24 4864.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. MT-ND2 MT-ND2 583.04 4694.15
19. RPL7 ENSGALG00000035252 572.44 4608.81 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
20. RPL8 ENSGALG00000016232 540.64 4352.78 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. MDK ENSGALG00000008367 530.04 4267.44 midkine [Source:NCBI gene;Acc:423196]
22. RPL7A ENSGALG00000003197 530.04 4267.44 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. TMSB4X ENSGALG00000026383 530.04 4267.44 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
24. RPL23 ENSGALG00000001634 508.84 4096.75 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPS10 ENSGALG00000002813 508.84 4096.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
26. RPL26 RPL26 498.24 4011.41
27. RPS3 ENSGALG00000017330 498.24 4011.41 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
28. RPL31 ENSGALG00000016775 487.63 3925.99 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
29. RPSA 392.23 3157.91 ribosomal protein SA
30. EEF1B2 ENSGALG00000008590 360.43 2901.88 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
31. ENSGALG00000018386 ENSGALG00000018386 360.43 2901.88
32. RPS11 ENSGALG00000017299 360.43 2901.88 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RAN ENSGALG00000002569 349.83 2816.54 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
34. RPL15 ENSGALG00000011290 349.83 2816.54 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
35. RPS24 ENSGALG00000004871 349.83 2816.54 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
36. CIRBP ENSGALG00000030918 339.22 2731.12 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
37. RPL6 ENSGALG00000004818 339.22 2731.12 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
38. SLC25A6_1 ENSGALG00000016691 339.22 2731.12 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
39. RPL13 ENSGALG00000006179 328.62 2645.77 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
40. RPL21 ENSGALG00000027035 328.62 2645.77 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. RPS6 ENSGALG00000015082 328.62 2645.77 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
42. ATP6V0C ENSGALG00000009229 318.02 2560.43 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
43. EIF4G2 ENSGALG00000005587 318.02 2560.43 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
44. RPS7 ENSGALG00000016392 318.02 2560.43 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
45. RPL27A ENSGALG00000005948 307.42 2475.09 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
46. RPS15A ENSGALG00000006771 307.42 2475.09 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. RPS20 ENSGALG00000014432 307.42 2475.09 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
48. RPS4 RPS4 307.42 2475.09
49. H3-IX H3-IX 296.82 2389.75
50. RPL14 ENSGALG00000043379 296.82 2389.75 ribosomal protein L14
51. RPL23A ENSGALG00000003966 296.82 2389.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
52. HMGN5 ENSGALG00000007131 286.22 2304.40 high mobility group nucleosome binding domain 5, transcript variant X1
53. RPS23 ENSGALG00000015617 286.22 2304.40 ribosomal protein S23
54. RPL32 ENSGALG00000027142 275.62 2219.06 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. RPS3A ENSGALG00000010077 275.62 2219.06 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. MEIS2 ENSGALG00000039118 265.02 2133.72 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
57. CALM CALM 254.42 2048.38
58. CRHOA CRHOA 254.42 2048.38
59. RPL27 ENSGALG00000002837 254.42 2048.38 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 254.42 2048.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. ENSGALG00000002696 ENSGALG00000002696 243.82 1963.03
62. RPL12 ENSGALG00000008806 243.82 1963.03 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
63. RPS16 ENSGALG00000026490 243.82 1963.03 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
64. ENSGALG00000028992 ENSGALG00000028992 233.22 1877.69
65. RPL18A 233.22 1877.69 ribosomal protein L18a
66. RPS14 ENSGALG00000004588 233.22 1877.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. STMN1 ENSGALG00000001475 233.22 1877.69 stathmin 1 [Source:NCBI gene;Acc:396057]
68. gga-mir-3526 ENSGALG00000029121 233.22 1877.69 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
69. EIF3F ENSGALG00000005326 222.62 1792.35 eukaryotic translation initiation factor 3 subunit F
70. KPNA2 ENSGALG00000003584 222.62 1792.35 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
71. RPS27A ENSGALG00000036790 222.62 1792.35 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
72. ANP32B ENSGALG00000037483 212.02 1707.01 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
73. FKBP4 ENSGALG00000014331 212.02 1707.01 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
74. RPL10A ENSGALG00000002644 212.02 1707.01 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPS29 ENSGALG00000012229 212.02 1707.01 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
76. ATP5G3 201.41 1621.58 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. HSPE1 ENSGALG00000009070 201.41 1621.58 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
78. RPL3 ENSGALG00000012172 201.41 1621.58 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
79. RPS8 ENSGALG00000010124 201.41 1621.58 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
80. TPT1 ENSGALG00000028872 201.41 1621.58 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
81. ACO2 ENSGALG00000011950 190.81 1536.24 aconitase 2 [Source:NCBI gene;Acc:374009]
82. HNRNPDL ENSGALG00000023199 190.81 1536.24 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
83. LDHB ENSGALG00000035836 190.81 1536.24 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
84. CCT6 CCT6 180.21 1450.90
85. EEF1D 180.21 1450.90 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. RPL38 ENSGALG00000001465 180.21 1450.90 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
87. RPLP2 ENSGALG00000034811 180.21 1450.90 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
88. RPS12 ENSGALG00000013990 180.21 1450.90 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
89. SNRPG ENSGALG00000028409 180.21 1450.90 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
90. ATP6V1G1 ENSGALG00000007190 169.61 1365.56 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
91. BTF3L4 ENSGALG00000010570 169.61 1365.56 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
92. CDC42 ENSGALG00000004796 169.61 1365.56 cell division cycle 42 [Source:NCBI gene;Acc:395917]
93. EIF4A2 ENSGALG00000008684 169.61 1365.56 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
94. NONO ENSGALG00000005507 169.61 1365.56 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
95. PGK1 ENSGALG00000007936 169.61 1365.56 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
96. RPL36AL ENSGALG00000004952 169.61 1365.56 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
97. RPLP1 ENSGALG00000030878 169.61 1365.56 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
98. EIF1 ENSGALG00000028517 159.01 1280.22 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
99. EIF4A3 ENSGALG00000008530 159.01 1280.22 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
100. EIF5A2 ENSGALG00000009309 159.01 1280.22 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA