Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s63.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4955.28 39887.89
2. MT-ATP6 MT-ATP6 3282.55 26423.13
3. EEF1A EEF1A 2457.11 19778.69
4. MT-ND5 MT-ND5 2289.40 18428.69
5. MT-CO1 MT-CO1 2082.39 16762.35
6. MT-ND4 MT-ND4 1910.31 15377.18
7. gga-mir-3527 gga-mir-3527 1877.12 15110.02
8. MT-CYB MT-CYB 1760.94 14174.82
9. MT-ND1 MT-ND1 1672.72 13464.68
10. GAPDH ENSGALG00000014442 1546.94 12452.21 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND3 MT-ND3 1463.09 11777.25
12. gga-mir-3533 ENSGALG00000027736 1299.74 10462.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. NME2 ENSGALG00000002932 860.38 6925.69 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPL5 ENSGALG00000005922 807.10 6496.81 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. RPS3 ENSGALG00000017330 672.58 5413.98 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
16. RPL8 ENSGALG00000016232 643.76 5181.99 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL26 RPL26 641.14 5160.90
18. ENO1 ENSGALG00000002377 599.21 4823.39 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
19. PPIA ENSGALG00000028600 570.39 4591.40 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. ENSGALG00000018384 ENSGALG00000018384 567.76 4570.23
21. MDK ENSGALG00000008367 487.40 3923.36 midkine [Source:NCBI gene;Acc:423196]
22. RPL7A ENSGALG00000003197 480.42 3867.18 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPS7 ENSGALG00000016392 474.30 3817.91 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL7 ENSGALG00000035252 468.19 3768.73 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. RPS6 ENSGALG00000015082 446.35 3592.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
26. RPS4 RPS4 445.48 3585.92
27. RPS10 ENSGALG00000002813 441.98 3557.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
28. TMSB4X ENSGALG00000026383 435.00 3501.56 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
29. STMN1 ENSGALG00000001475 428.88 3452.30 stathmin 1 [Source:NCBI gene;Acc:396057]
30. RPL31 ENSGALG00000016775 424.51 3417.12 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
31. RPL27A ENSGALG00000005948 420.15 3382.03 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL23 ENSGALG00000001634 406.17 3269.50 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. RPL15 ENSGALG00000011290 397.44 3199.22 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
34. RPS20 ENSGALG00000014432 386.95 3114.78 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
35. CIRBP ENSGALG00000030918 383.46 3086.69 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. RPL21 ENSGALG00000027035 382.59 3079.69 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
37. H3-IX H3-IX 379.97 3058.60
38. EIF4G2 ENSGALG00000005587 373.85 3009.33 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
39. ENSGALG00000018386 ENSGALG00000018386 372.10 2995.25
40. RPL27 ENSGALG00000002837 368.61 2967.15 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPS24 ENSGALG00000004871 348.52 2805.44 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
42. RPS23 ENSGALG00000015617 347.65 2798.43 ribosomal protein S23
43. EEF1B2 ENSGALG00000008590 336.29 2706.99 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. RPS15A ENSGALG00000006771 324.94 2615.63 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. RPSA 318.82 2566.37 ribosomal protein SA
46. MT-ND2 MT-ND2 316.20 2545.28
47. SLC25A6_1 ENSGALG00000016691 314.45 2531.19 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. RPS11 ENSGALG00000017299 312.71 2517.18 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. ENSGALG00000028992 ENSGALG00000028992 299.61 2411.73
50. RAN ENSGALG00000002569 298.73 2404.65 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
51. RPL13 ENSGALG00000006179 289.12 2327.29 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
52. RPL14 ENSGALG00000043379 283.88 2285.11 ribosomal protein L14
53. RPS27A ENSGALG00000036790 281.26 2264.02 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
54. RPS16 ENSGALG00000026490 277.77 2235.93 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPS3A ENSGALG00000010077 277.77 2235.93 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. RPL6 ENSGALG00000004818 267.29 2151.57 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. RPL32 ENSGALG00000027142 265.54 2137.48 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. HMGN5 ENSGALG00000007131 250.69 2017.95 high mobility group nucleosome binding domain 5, transcript variant X1
59. SNRPG ENSGALG00000028409 250.69 2017.95 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
60. HNRNPDL ENSGALG00000023199 249.82 2010.94 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
61. RPL10A ENSGALG00000002644 243.70 1961.68 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
62. RPL23A ENSGALG00000003966 241.96 1947.67 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
63. RPS29 ENSGALG00000012229 241.96 1947.67 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
64. CNN3 ENSGALG00000005597 236.71 1905.41 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
65. RPS12 ENSGALG00000013990 236.71 1905.41 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
66. RPS14 ENSGALG00000004588 234.09 1884.32 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. ENSGALG00000002696 ENSGALG00000002696 227.98 1835.14
68. RPL36 ENSGALG00000000474 225.36 1814.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. MEIS2 ENSGALG00000039118 222.74 1792.96 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
70. CRHOA CRHOA 221.87 1785.96
71. RPL18A 217.50 1750.78 ribosomal protein L18a
72. RPL35A ENSGALG00000007611, ENSGALG00000041230 214.88 1729.69 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
73. RPL38 ENSGALG00000001465 212.26 1708.60 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. BTF3L4 ENSGALG00000010570 211.38 1701.52 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. RPL4 ENSGALG00000007711 209.64 1687.51 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
76. KPNA2 ENSGALG00000003584 206.14 1659.34 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
77. RPS15 ENSGALG00000015195 206.14 1659.34 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
78. H2AFZ ENSGALG00000014023 205.27 1652.34 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
79. ATP6V0C ENSGALG00000009229 197.41 1589.07 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
80. PRDX1 ENSGALG00000010243 195.66 1574.98 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. FKBP4 ENSGALG00000014331 194.79 1567.98 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
82. CALM CALM 191.29 1539.80
83. RPLP1 ENSGALG00000030878 188.67 1518.71 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
84. MIF ENSGALG00000006326 186.05 1497.62 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
85. TPT1 ENSGALG00000028872 179.94 1448.44 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
86. RPS8 ENSGALG00000010124 179.06 1441.36 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
87. DDX5 ENSGALG00000003532 178.19 1434.35 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
88. RPL36AL ENSGALG00000004952 178.19 1434.35 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
89. RPL3 ENSGALG00000012172 169.46 1364.08 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
90. RPL9 ENSGALG00000000150 165.96 1335.91 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. IGF2BP3 ENSGALG00000010961 164.22 1321.90 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
92. TCEB3 ENSGALG00000034625 164.22 1321.90 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
93. NDUFB9 ENSGALG00000042242 162.47 1307.81 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
94. RPL35 ENSGALG00000035677 162.47 1307.81 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
95. DDX3X ENSGALG00000016231 161.59 1300.73 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
96. ALDH1A2 ENSGALG00000004270 160.72 1293.73 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
97. EEF1D 160.72 1293.73 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. LUM ENSGALG00000011271 160.72 1293.73 lumican [Source:NCBI gene;Acc:417891]
99. RPL19 ENSGALG00000001658 160.72 1293.73 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
100. TCF12 ENSGALG00000004304 160.72 1293.73 transcription factor 12 [Source:NCBI gene;Acc:396334]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA