Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s62.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5408.38 43529.93
2. MT-ATP6 MT-ATP6 3331.46 26813.61
3. MT-ND5 MT-ND5 2954.54 23779.93
4. EEF1A EEF1A 2624.47 21123.33
5. GAPDH ENSGALG00000014442 2245.45 18072.75 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. MT-CO1 MT-CO1 2140.55 17228.45
7. MT-ND4 MT-ND4 1891.60 15224.75
8. gga-mir-3527 gga-mir-3527 1887.41 15191.02
9. MT-ND1 MT-ND1 1784.61 14363.63
10. MT-CYB MT-CYB 1678.32 13508.14
11. MT-ND3 MT-ND3 1571.32 12646.94
12. gga-mir-3533 ENSGALG00000027736 1331.46 10716.40 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPL5 ENSGALG00000005922 1164.33 9371.24 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
14. NME2 ENSGALG00000002932 953.84 7677.08 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. ENO1 ENSGALG00000002377 716.08 5763.45 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
16. RPL8 ENSGALG00000016232 697.90 5617.12 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPS3 ENSGALG00000017330 658.04 5296.31 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. RPL26 RPL26 620.98 4998.02
19. PPIA ENSGALG00000028600 620.28 4992.39 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPL7A ENSGALG00000003197 527.97 4249.42 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
21. RPS7 ENSGALG00000016392 523.08 4210.07 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL27A ENSGALG00000005948 514.68 4142.46 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPS4 RPS4 513.98 4136.82
24. MDK ENSGALG00000008367 506.99 4080.56 midkine [Source:NCBI gene;Acc:423196]
25. RPL7 ENSGALG00000035252 506.99 4080.56 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPS20 ENSGALG00000014432 506.99 4080.56 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
27. RPS10 ENSGALG00000002813 505.59 4069.30 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
28. STMN1 ENSGALG00000001475 483.91 3894.80 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPS6 ENSGALG00000015082 443.36 3568.43 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPL23 ENSGALG00000001634 418.88 3371.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. TMSB4X ENSGALG00000026383 407.69 3281.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPL15 ENSGALG00000011290 405.59 3264.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. CIRBP ENSGALG00000030918 386.71 3112.48 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. H3-IX H3-IX 381.12 3067.49
35. RPL31 ENSGALG00000016775 380.42 3061.85 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
36. ENSGALG00000018386 ENSGALG00000018386 376.22 3028.05
37. RAN ENSGALG00000002569 374.82 3016.78 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
38. RPSA 374.82 3016.78 ribosomal protein SA
39. EIF4G2 ENSGALG00000005587 358.04 2881.72 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
40. RPS16 ENSGALG00000026490 357.34 2876.09 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. EEF1B2 ENSGALG00000008590 356.64 2870.46 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
42. RPL27 ENSGALG00000002837 355.24 2859.19 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. RPS24 ENSGALG00000004871 354.54 2853.55 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
44. SLC25A6_1 ENSGALG00000016691 351.75 2831.10 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
45. RPS23 ENSGALG00000015617 345.45 2780.39 ribosomal protein S23
46. RPS27A ENSGALG00000036790 331.47 2667.87 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. ENSGALG00000018384 ENSGALG00000018384 328.67 2645.34
48. RPS15A ENSGALG00000006771 327.97 2639.70 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
49. RPS11 ENSGALG00000017299 324.47 2611.53 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPL32 ENSGALG00000027142 318.18 2560.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. RPL21 ENSGALG00000027035 313.99 2527.18 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
52. RPL14 ENSGALG00000043379 298.60 2403.31 ribosomal protein L14
53. RPS3A ENSGALG00000010077 297.20 2392.05 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
54. RPL23A ENSGALG00000003966 281.12 2262.62 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
55. ENSGALG00000028992 ENSGALG00000028992 272.73 2195.10
56. RPL10A ENSGALG00000002644 271.33 2183.83 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
57. MT-ND2 MT-ND2 267.83 2155.66
58. RPL18A 267.83 2155.66 ribosomal protein L18a
59. RPS14 ENSGALG00000004588 267.13 2150.02 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. SNRPG ENSGALG00000028409 264.33 2127.49 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
61. RPS29 ENSGALG00000012229 262.24 2110.67 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
62. RPL4 ENSGALG00000007711 257.34 2071.23 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
63. RPS12 ENSGALG00000013990 255.94 2059.96 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
64. ENSGALG00000002696 ENSGALG00000002696 255.24 2054.33
65. RPL13 ENSGALG00000006179 253.85 2043.14 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
66. RPL38 ENSGALG00000001465 246.15 1981.16 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
67. RPLP1 ENSGALG00000030878 245.45 1975.53 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
68. RPS8 ENSGALG00000010124 244.75 1969.90 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
69. RPL35A ENSGALG00000007611, ENSGALG00000041230 240.56 1936.17 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
70. FKBP4 ENSGALG00000014331 234.27 1885.55 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
71. BTF3L4 ENSGALG00000010570 225.17 1812.31 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
72. PGK1 ENSGALG00000007936 223.08 1795.48 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
73. ATP6V0C ENSGALG00000009229 218.88 1761.68 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
74. HMGN5 ENSGALG00000007131 214.68 1727.88 high mobility group nucleosome binding domain 5, transcript variant X1
75. CRHOA CRHOA 212.59 1711.05
76. RPL36 ENSGALG00000000474 205.59 1654.71 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
77. CNN3 ENSGALG00000005597 204.89 1649.08 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
78. LDHB ENSGALG00000035836 203.50 1637.89 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
79. MIF ENSGALG00000006326 202.80 1632.26 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
80. RPL36AL ENSGALG00000004952 198.60 1598.45 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
81. RPL3 ENSGALG00000012172 196.50 1581.55 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
82. RPL9 ENSGALG00000000150 194.41 1564.73 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
83. RPS15 ENSGALG00000015195 193.71 1559.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
84. EEF1D 193.01 1553.46 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. HNRNPDL ENSGALG00000023199 190.91 1536.56 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
86. TCEB3 ENSGALG00000034625 190.21 1530.93 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
87. ATP5G3 187.41 1508.39 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. PRDX1 ENSGALG00000010243 187.41 1508.39 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. CDK1 ENSGALG00000003085 186.71 1502.76 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
90. H2AFZ ENSGALG00000014023 184.61 1485.85 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
91. EIF4EBP1 ENSGALG00000003205 182.52 1469.03 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
92. RPLP2 ENSGALG00000034811 181.12 1457.76 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
93. KPNA2 ENSGALG00000003584 178.32 1435.23 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
94. RPS21 ENSGALG00000005338 174.82 1407.06 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
95. EIF1 ENSGALG00000028517 174.13 1401.50 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
96. DDX5 ENSGALG00000003532 173.43 1395.87 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
97. RPL19 ENSGALG00000001658 171.33 1378.97 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
98. CALM CALM 170.63 1373.33
99. TPT1 ENSGALG00000028872 169.93 1367.70 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
100. SNRPE ENSGALG00000000137 169.23 1362.07 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA