Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s61.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4681.40 37681.56
2. EEF1A EEF1A 2558.83 20596.55
3. GAPDH ENSGALG00000014442 2268.89 18262.77 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
4. MT-ATP6 MT-ATP6 2148.20 17291.31
5. MT-CO1 MT-CO1 2059.20 16574.93
6. gga-mir-3527 gga-mir-3527 1782.08 14344.33
7. MT-ND5 MT-ND5 1767.92 14230.36
8. MT-CYB MT-CYB 1744.32 14040.39
9. MT-ND4 MT-ND4 1567.66 12618.42
10. ENSGALG00000018384 ENSGALG00000018384 1422.69 11451.53
11. MT-ND3 MT-ND3 1314.14 10577.79
12. MT-ND1 MT-ND1 1266.94 10197.86
13. gga-mir-3533 ENSGALG00000027736 1122.65 9036.44 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. NME2 ENSGALG00000002932 863.73 6952.34 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 860.36 6925.22 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 795.63 6404.19 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. ENO1 ENSGALG00000002377 641.90 5166.79 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. RPS3 ENSGALG00000017330 589.31 4743.48 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL26 RPL26 560.31 4510.05
20. ENSGALG00000018386 ENSGALG00000018386 546.83 4401.55
21. RPS20 ENSGALG00000014432 534.69 4303.83 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
22. RPS6 ENSGALG00000015082 530.64 4271.23 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
23. RPL7 ENSGALG00000035252 522.55 4206.11 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. STMN1 ENSGALG00000001475 518.51 4173.59 stathmin 1 [Source:NCBI gene;Acc:396057]
25. PPIA ENSGALG00000028600 511.77 4119.34 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPL7A ENSGALG00000003197 511.77 4119.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPL27A ENSGALG00000005948 502.33 4043.36 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. MDK ENSGALG00000008367 498.28 4010.76 midkine [Source:NCBI gene;Acc:423196]
29. RPS10 ENSGALG00000002813 498.28 4010.76 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
30. RPS7 ENSGALG00000016392 491.54 3956.51 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. RPS4 RPS4 461.87 3717.69
32. TMSB4X ENSGALG00000026383 456.48 3674.30 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
33. RPL15 ENSGALG00000011290 431.53 3473.47 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
34. RPL21 ENSGALG00000027035 426.81 3435.48 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. CIRBP ENSGALG00000030918 420.07 3381.23 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. H3-IX H3-IX 403.21 3245.52
37. MT-ND2 MT-ND2 398.49 3207.53
38. RPSA 389.72 3136.94 ribosomal protein SA
39. RPL27 ENSGALG00000002837 385.00 3098.94 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPS11 ENSGALG00000017299 360.06 2898.20 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPL31 ENSGALG00000016775 348.59 2805.87 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. RPL23 ENSGALG00000001634 347.25 2795.09 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
43. HMGN5 ENSGALG00000007131 345.90 2784.22 high mobility group nucleosome binding domain 5, transcript variant X1
44. RAN ENSGALG00000002569 345.22 2778.75 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPS23 ENSGALG00000015617 340.50 2740.76 ribosomal protein S23
46. EIF4G2 ENSGALG00000005587 334.43 2691.90 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
47. RPL18A 329.04 2648.51 ribosomal protein L18a
48. RPL14 ENSGALG00000043379 324.99 2615.91 ribosomal protein L14
49. ENSGALG00000028992 ENSGALG00000028992 317.58 2556.27
50. EEF1B2 ENSGALG00000008590 309.49 2491.15 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. RPS24 ENSGALG00000004871 307.46 2474.81 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
52. SLC25A6_1 ENSGALG00000016691 306.79 2469.42 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. RPS15A ENSGALG00000006771 304.77 2453.16 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
54. RPL4 ENSGALG00000007711 292.63 2355.44 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
55. RPS3A ENSGALG00000010077 290.61 2339.18 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. RPS16 ENSGALG00000026490 279.82 2252.33 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. RPL13 ENSGALG00000006179 276.45 2225.20 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
58. RPS27A ENSGALG00000036790 275.77 2219.73 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPL32 ENSGALG00000027142 274.42 2208.86 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. RPL10A ENSGALG00000002644 273.75 2203.47 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
61. RPS12 ENSGALG00000013990 262.29 2111.23 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. RPL6 ENSGALG00000004818 258.92 2084.10 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPS14 ENSGALG00000004588 255.55 2056.98 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. SNRPG ENSGALG00000028409 250.83 2018.98 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
65. CNN3 ENSGALG00000005597 250.15 2013.51 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
66. RPS8 ENSGALG00000010124 250.15 2013.51 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
67. CRHOA CRHOA 248.80 2002.64
68. ENSGALG00000002696 ENSGALG00000002696 245.43 1975.52
69. MIF ENSGALG00000006326 241.39 1943.00 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
70. RPLP1 ENSGALG00000030878 241.39 1943.00 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
71. CALM CALM 240.04 1932.13
72. RPL38 ENSGALG00000001465 225.20 1812.68 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
73. BTF3L4 ENSGALG00000010570 224.53 1807.29 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
74. RPS29 ENSGALG00000012229 223.86 1801.90 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
75. PGK1 ENSGALG00000007936 220.48 1774.69 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
76. HNRNPDL ENSGALG00000023199 219.14 1763.90 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
77. RPL35A ENSGALG00000007611, ENSGALG00000041230 219.14 1763.90 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
78. RPL23A ENSGALG00000003966 218.46 1758.43 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
79. KPNA2 ENSGALG00000003584 217.79 1753.04 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
80. CDK1 ENSGALG00000003085 206.32 1660.71 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
81. FKBP4 ENSGALG00000014331 203.63 1639.06 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
82. RPS15 ENSGALG00000015195 198.91 1601.07 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
83. RPL36AL ENSGALG00000004952 190.82 1535.95 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
84. RPL3 ENSGALG00000012172 184.75 1487.09 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. ATP5G3 184.07 1481.62 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
86. MEIS2 ENSGALG00000039118 181.38 1459.97 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
87. PRDX1 ENSGALG00000010243 177.33 1427.37 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. RPLP2 ENSGALG00000034811 175.31 1411.11 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
89. SNRPE ENSGALG00000000137 174.63 1405.63 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
90. H2AFZ ENSGALG00000014023 173.96 1400.24 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
91. RPL9 ENSGALG00000000150 173.96 1400.24 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
92. TCEB3 ENSGALG00000034625 173.96 1400.24 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
93. IGF2BP3 ENSGALG00000010961 171.26 1378.51 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
94. RPL36 ENSGALG00000000474 169.91 1367.64 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
95. DDX5 ENSGALG00000003532 168.57 1356.85 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
96. ATP6V0C ENSGALG00000009229 166.54 1340.52 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
97. ERH ENSGALG00000017384 163.17 1313.39 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
98. EIF4EBP1 ENSGALG00000003205 161.15 1297.13 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
99. HMGB1 ENSGALG00000042875 152.38 1226.54 high mobility group box 1 [Source:NCBI gene;Acc:395724]
100. EIF4A2 ENSGALG00000008684 151.71 1221.15 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA