Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s59.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4544.23 36579.34
2. MT-ATP6 MT-ATP6 2842.95 22884.68
3. EEF1A EEF1A 2695.50 21697.76
4. MT-ND5 MT-ND5 2086.75 16797.55
5. MT-CO1 MT-CO1 1967.39 15836.75
6. GAPDH ENSGALG00000014442 1909.81 15373.25 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1788.34 14395.46
8. gga-mir-3527 gga-mir-3527 1777.81 14310.70
9. MT-CYB MT-CYB 1690.74 13609.82
10. MT-ND1 MT-ND1 1615.62 13005.13
11. ENSGALG00000018384 ENSGALG00000018384 1416.21 11399.96
12. MT-ND3 MT-ND3 1256.12 10111.29
13. gga-mir-3533 ENSGALG00000027736 1138.16 9161.76 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. NME2 ENSGALG00000002932 825.71 6646.65 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 822.90 6624.03 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 705.65 5680.22 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. ENO1 ENSGALG00000002377 655.80 5278.94 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. RPS3 ENSGALG00000017330 623.50 5018.94 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL26 RPL26 616.48 4962.43
20. PPIA ENSGALG00000028600 586.28 4719.33 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
21. RPL7 ENSGALG00000035252 564.52 4544.17 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
22. MT-ND2 MT-ND2 518.18 4171.15
23. MDK ENSGALG00000008367 515.37 4148.53 midkine [Source:NCBI gene;Acc:423196]
24. RPS7 ENSGALG00000016392 485.18 3905.52 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL7A ENSGALG00000003197 476.75 3837.66 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. STMN1 ENSGALG00000001475 466.92 3758.53 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPS4 RPS4 464.81 3741.55
28. RPL27A ENSGALG00000005948 461.30 3713.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. ENSGALG00000018386 ENSGALG00000018386 445.15 3583.29
30. RPS10 ENSGALG00000002813 445.15 3583.29 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. TMSB4X ENSGALG00000026383 428.30 3447.65 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPS6 ENSGALG00000015082 424.09 3413.76 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. CIRBP ENSGALG00000030918 413.56 3329.00 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. RPS20 ENSGALG00000014432 410.75 3306.38 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
35. H3-IX H3-IX 398.11 3204.64
36. RPL27 ENSGALG00000002837 389.69 3136.86 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
37. RPL15 ENSGALG00000011290 384.77 3097.25 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
38. RPL21 ENSGALG00000027035 369.32 2972.89 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPL23 ENSGALG00000001634 367.92 2961.62 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
40. RPL31 ENSGALG00000016775 367.22 2955.98 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. RPS24 ENSGALG00000004871 358.79 2888.12 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
42. RPSA 356.69 2871.22 ribosomal protein SA
43. RPS23 ENSGALG00000015617 355.28 2859.87 ribosomal protein S23
44. EIF4G2 ENSGALG00000005587 350.37 2820.35 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
45. EEF1B2 ENSGALG00000008590 334.92 2695.98 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. RAN ENSGALG00000002569 334.22 2690.35 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
47. RPS11 ENSGALG00000017299 324.39 2611.22 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. ENSGALG00000028992 ENSGALG00000028992 323.68 2605.50
49. RPL14 ENSGALG00000043379 313.15 2520.74 ribosomal protein L14
50. RPS27A ENSGALG00000036790 311.75 2509.47 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. RPS15A ENSGALG00000006771 307.54 2475.58 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. SLC25A6_1 ENSGALG00000016691 304.03 2447.33 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. RPL4 ENSGALG00000007711 301.92 2430.34 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
54. RPS3A ENSGALG00000010077 301.22 2424.71 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
55. RPL32 ENSGALG00000027142 289.98 2334.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. HMGN5 ENSGALG00000007131 285.77 2300.34 high mobility group nucleosome binding domain 5, transcript variant X1
57. RPS16 ENSGALG00000026490 281.56 2266.45 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. SNRPG ENSGALG00000028409 261.90 2108.20 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
59. RPS12 ENSGALG00000013990 259.79 2091.21 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
60. RPL23A ENSGALG00000003966 255.58 2057.32 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
61. RPS29 ENSGALG00000012229 252.07 2029.07 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
62. RPS14 ENSGALG00000004588 240.13 1932.96 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. CRHOA CRHOA 238.73 1921.69
64. RPL13 ENSGALG00000006179 238.73 1921.69 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
65. RPL18A 231.70 1865.10 ribosomal protein L18a
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 231.70 1865.10 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. ENSGALG00000002696 ENSGALG00000002696 230.30 1853.83
68. RPL10A ENSGALG00000002644 229.60 1848.19 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. BTF3L4 ENSGALG00000010570 227.49 1831.21 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
70. RPL36 ENSGALG00000000474 223.98 1802.95 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
71. RPL6 ENSGALG00000004818 222.58 1791.69 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
72. KPNA2 ENSGALG00000003584 221.17 1780.34 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
73. MIF ENSGALG00000006326 220.47 1774.70 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
74. RPLP1 ENSGALG00000030878 216.26 1740.81 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
75. RPL38 ENSGALG00000001465 214.15 1723.83 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
76. ATP6V0C ENSGALG00000009229 213.45 1718.19 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
77. FKBP4 ENSGALG00000014331 209.94 1689.94 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
78. CNN3 ENSGALG00000005597 207.83 1672.95 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
79. RPS8 ENSGALG00000010124 206.43 1661.68 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
80. TCEB3 ENSGALG00000034625 204.32 1644.70 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. H2AFZ ENSGALG00000014023 201.51 1622.08 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
82. HNRNPDL ENSGALG00000023199 200.11 1610.81 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
83. ERH ENSGALG00000017384 199.41 1605.18 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
84. RPL36AL ENSGALG00000004952 199.41 1605.18 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
85. MEIS2 ENSGALG00000039118 198.00 1593.83 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
86. PGK1 ENSGALG00000007936 195.19 1571.21 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
87. RPS21 ENSGALG00000005338 188.17 1514.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
88. CDK1 ENSGALG00000003085 184.66 1486.44 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
89. PRDX1 ENSGALG00000010243 184.66 1486.44 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
90. RPL9 ENSGALG00000000150 184.66 1486.44 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. CALM CALM 183.26 1475.17
92. RPL3 ENSGALG00000012172 182.56 1469.54 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. EIF1 ENSGALG00000028517 180.45 1452.55 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
94. RPL19 ENSGALG00000001658 180.45 1452.55 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
95. EEF1D 178.34 1435.57 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. RPS15 ENSGALG00000015195 176.94 1424.30 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
97. ATP5G3 175.53 1412.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
98. LDHB ENSGALG00000035836 174.83 1407.32 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
99. EIF4EBP1 ENSGALG00000003205 173.43 1396.05 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
100. RPLP2 ENSGALG00000034811 173.43 1396.05 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA