Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s51.

Sample reads: 124,233. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 5139.80 41372.10
2. MT-ATP6 MT-ATP6 4522.09 36399.93
3. MT-CO3 MT-CO3 4288.99 34523.63
4. MT-ND4 MT-ND4 3111.85 25048.40
5. gga-mir-3527 gga-mir-3527 2995.30 24110.25
6. MT-ND1 MT-ND1 2575.73 20732.98
7. MT-CYB MT-CYB 2447.52 19700.97
8. EEF1A EEF1A 1876.43 15104.06
9. MT-CO1 MT-CO1 1689.96 13603.10
10. PPIA ENSGALG00000028600 1386.93 11163.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. RPLP1 ENSGALG00000030878 1095.56 8818.56 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. ENSGALG00000018384 ENSGALG00000018384 967.35 7786.55
13. RPS7 ENSGALG00000016392 850.81 6848.48 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
14. MT-ND2 MT-ND2 827.50 6660.85
15. NME2 ENSGALG00000002932 792.53 6379.36 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. MT-ND3 MT-ND3 745.91 6004.10
17. RPL31 ENSGALG00000016775 745.91 6004.10 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
18. RPL7A ENSGALG00000003197 687.64 5535.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
19. GAPDH ENSGALG00000014442 629.36 5065.95 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. ENSGALG00000018386 ENSGALG00000018386 606.05 4878.31
21. RPS23 ENSGALG00000015617 571.09 4596.91 ribosomal protein S23
22. STMN1 ENSGALG00000001475 571.09 4596.91 stathmin 1 [Source:NCBI gene;Acc:396057]
23. RPL14 ENSGALG00000043379 547.78 4409.28 ribosomal protein L14
24. gga-mir-3533 ENSGALG00000027736 524.47 4221.65 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
25. SNRPG ENSGALG00000028409 489.50 3940.16 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
26. RPL5 ENSGALG00000005922 466.19 3752.53 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
27. MDK ENSGALG00000008367 419.58 3377.35 midkine [Source:NCBI gene;Acc:423196]
28. RPL23A ENSGALG00000003966 419.58 3377.35 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
29. RPL36 ENSGALG00000000474 419.58 3377.35 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
30. RPS16 ENSGALG00000026490 419.58 3377.35 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
31. ENSGALG00000002696 ENSGALG00000002696 407.92 3283.50
32. RPL18A 407.92 3283.50 ribosomal protein L18a
33. RPL26 RPL26 407.92 3283.50
34. EIF1 ENSGALG00000028517 396.27 3189.72 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
35. RPL23 ENSGALG00000001634 396.27 3189.72 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
36. RPL27A ENSGALG00000005948 384.61 3095.86 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPS12 ENSGALG00000013990 384.61 3095.86 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. RPL35A ENSGALG00000007611, ENSGALG00000041230 372.96 3002.09 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
39. EIF4G2 ENSGALG00000005587 349.65 2814.46 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
40. RPS29 ENSGALG00000012229 349.65 2814.46 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. CIRBP ENSGALG00000030918 337.99 2720.60 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. H2AFZ ENSGALG00000014023 337.99 2720.60 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
43. RPS15A ENSGALG00000006771 337.99 2720.60 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. RPL37A ENSGALG00000011472 314.68 2532.97 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
45. RPL38 ENSGALG00000001465 314.68 2532.97 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. CRHOA CRHOA 303.03 2439.20
47. EEF1B2 ENSGALG00000008590 303.03 2439.20 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPL27 ENSGALG00000002837 303.03 2439.20 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPL8 ENSGALG00000016232 303.03 2439.20 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
50. RAN ENSGALG00000002569 291.37 2345.34 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
51. RPL32 ENSGALG00000027142 291.37 2345.34 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. SLC25A6_1 ENSGALG00000016691 291.37 2345.34 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. EIF3F ENSGALG00000005326 279.72 2251.57 eukaryotic translation initiation factor 3 subunit F
54. RPL29 ENSGALG00000026978 279.72 2251.57 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
55. RPL21 ENSGALG00000027035 268.06 2157.71 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPS10 ENSGALG00000002813 268.06 2157.71 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
57. RPS3 ENSGALG00000017330 268.06 2157.71 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
58. RPS4 RPS4 268.06 2157.71
59. RPS6 ENSGALG00000015082 268.06 2157.71 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
60. ENSGALG00000028992 ENSGALG00000028992 256.41 2063.94
61. HNRNPDL ENSGALG00000023199 256.41 2063.94 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
62. HSPA8 ENSGALG00000006512 256.41 2063.94 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
63. MEIS2 ENSGALG00000039118 256.41 2063.94 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
64. PRDX1 ENSGALG00000010243 256.41 2063.94 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
65. RPL10A ENSGALG00000002644 256.41 2063.94 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
66. RPL13 ENSGALG00000006179 256.41 2063.94 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
67. RPL3 ENSGALG00000012172 256.41 2063.94 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
68. RPS24 ENSGALG00000004871 256.41 2063.94 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
69. FKBP4 ENSGALG00000014331 244.75 1970.08 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
70. RPS21 ENSGALG00000005338 244.75 1970.08 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
71. BTF3L4 ENSGALG00000010570 233.10 1876.31 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
72. HMGN5 ENSGALG00000007131 233.10 1876.31 high mobility group nucleosome binding domain 5, transcript variant X1
73. RPL12 ENSGALG00000008806 233.10 1876.31 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
74. SEC61G ENSGALG00000037863 233.10 1876.31 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
75. ATP5G3 221.44 1782.45 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
76. RPL9 ENSGALG00000000150 221.44 1782.45 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
77. ENO1 ENSGALG00000002377 209.79 1688.68 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
78. HMGB2 ENSGALG00000010745 209.79 1688.68 high mobility group box 2 [Source:NCBI gene;Acc:396482]
79. RPL30 ENSGALG00000029897 209.79 1688.68 ribosomal protein L30 [Source:NCBI gene;Acc:425416]
80. RPS2 ENSGALG00000005490 209.79 1688.68 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
81. RPS27A ENSGALG00000036790 209.79 1688.68 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
82. ALDH1A2 ENSGALG00000004270 198.13 1594.82 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
83. RPL6 ENSGALG00000004818 198.13 1594.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
84. RPLP2 ENSGALG00000034811 198.13 1594.82 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
85. RPS11 ENSGALG00000017299 198.13 1594.82 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
86. SNRPD1 ENSGALG00000041334 198.13 1594.82 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
87. SNRPE ENSGALG00000000137 198.13 1594.82 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
88. COX7B ENSGALG00000007863 186.48 1501.04 cytochrome c oxidase subunit 7B [Source:NCBI gene;Acc:771947]
89. COX7C ENSGALG00000027963 186.48 1501.04 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
90. HNRNPA3 ENSGALG00000009250 186.48 1501.04 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
91. RPL37 ENSGALG00000014833 186.48 1501.04 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
92. RPS14 ENSGALG00000004588 186.48 1501.04 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
93. CALM CALM 174.82 1407.19
94. CHCHD2 ENSGALG00000002495 174.82 1407.19 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
95. EEF1D 174.82 1407.19 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. HMGB1 ENSGALG00000042875 174.82 1407.19 high mobility group box 1 [Source:NCBI gene;Acc:395724]
97. MT-ATP8 MT-ATP8 174.82 1407.19
98. RPL36AL ENSGALG00000004952 174.82 1407.19 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
99. RPS8 ENSGALG00000010124 174.82 1407.19 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
100. TCEB3 ENSGALG00000034625 174.82 1407.19 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA