Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s45.

Sample reads: 124,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3807.28 30650.54
2. MT-ND5 MT-ND5 2660.10 21415.16
3. EEF1A EEF1A 2317.08 18653.67
4. MT-ATP6 MT-ATP6 2228.49 17940.48
5. ENSGALG00000018384 ENSGALG00000018384 2214.86 17830.75
6. MT-ND4 MT-ND4 1844.58 14849.81
7. gga-mir-3527 gga-mir-3527 1778.70 14319.44
8. MT-CYB MT-CYB 1662.85 13386.79
9. MT-CO1 MT-CO1 1540.18 12399.23
10. gga-mir-3533 ENSGALG00000027736 1406.15 11320.22 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1178.98 9491.39 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1147.18 9235.38
13. MT-ND3 MT-ND3 1097.21 8833.10
14. NME2 ENSGALG00000002932 885.94 7132.27 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MDK ENSGALG00000008367 738.29 5943.61 midkine [Source:NCBI gene;Acc:423196]
16. RPL8 ENSGALG00000016232 699.67 5632.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL26 RPL26 656.51 5285.24
18. PPIA ENSGALG00000028600 620.16 4992.60 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL5 ENSGALG00000005922 606.53 4882.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPS3 ENSGALG00000017330 577.00 4645.14 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. ENSGALG00000018386 ENSGALG00000018386 574.73 4626.87
22. RPL7A ENSGALG00000003197 536.11 4315.96 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. TMSB4X ENSGALG00000026383 536.11 4315.96 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
24. RPS7 ENSGALG00000016392 490.68 3950.22 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. ENO1 ENSGALG00000002377 467.96 3767.32 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
26. RPL7 ENSGALG00000035252 465.69 3749.04 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
27. RPL27A ENSGALG00000005948 463.42 3730.77 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. STMN1 ENSGALG00000001475 440.70 3547.86 stathmin 1 [Source:NCBI gene;Acc:396057]
29. MT-ND2 MT-ND2 433.88 3492.95
30. RPS10 ENSGALG00000002813 422.53 3401.58 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. CIRBP ENSGALG00000030918 420.25 3383.23 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. EIF4G2 ENSGALG00000005587 402.08 3236.95 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. RPS4 RPS4 397.54 3200.40
34. RPS6 ENSGALG00000015082 397.54 3200.40 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
35. RPL21 ENSGALG00000027035 392.99 3163.77 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
36. RPL15 ENSGALG00000011290 388.45 3127.22 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
37. RAN ENSGALG00000002569 374.82 3017.49 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
38. ENSGALG00000028992 ENSGALG00000028992 368.01 2962.67
39. H3-IX H3-IX 368.01 2962.67
40. RPL23 ENSGALG00000001634 365.74 2944.39 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. RPS20 ENSGALG00000014432 363.46 2926.04 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. EEF1B2 ENSGALG00000008590 347.56 2798.03 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. RPL27 ENSGALG00000002837 343.02 2761.49 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPL31 ENSGALG00000016775 343.02 2761.49 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. RPS15A ENSGALG00000006771 343.02 2761.49 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
46. RPS23 ENSGALG00000015617 333.93 2688.31 ribosomal protein S23
47. RPS24 ENSGALG00000004871 333.93 2688.31 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
48. RPL32 ENSGALG00000027142 331.66 2670.03 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. ALDH1A2 ENSGALG00000004270 324.85 2615.21 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
50. RPSA 320.30 2578.58 ribosomal protein SA
51. RPS27A ENSGALG00000036790 308.94 2487.12 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPL14 ENSGALG00000043379 306.67 2468.85 ribosomal protein L14
53. HMGN5 ENSGALG00000007131 304.40 2450.57 high mobility group nucleosome binding domain 5, transcript variant X1
54. RPS16 ENSGALG00000026490 293.04 2359.12 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. ATP6V0C ENSGALG00000009229 272.60 2194.57 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
56. SLC25A6_1 ENSGALG00000016691 270.33 2176.29 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. SNRPG ENSGALG00000028409 270.33 2176.29 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
58. RPL23A ENSGALG00000003966 265.78 2139.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. HNRNPDL ENSGALG00000023199 256.70 2066.57 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
60. RPL18A 254.42 2048.21 ribosomal protein L18a
61. RPS12 ENSGALG00000013990 254.42 2048.21 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. RPS29 ENSGALG00000012229 252.15 2029.94 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
63. RPLP1 ENSGALG00000030878 247.61 1993.39 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
64. ENSGALG00000002696 ENSGALG00000002696 243.07 1956.84
65. LDHB ENSGALG00000035836 243.07 1956.84 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. RPS11 ENSGALG00000017299 243.07 1956.84 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
67. CDK1 ENSGALG00000003085 236.25 1901.93 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
68. CRHOA CRHOA 233.98 1883.66
69. NONO ENSGALG00000005507 231.71 1865.38 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
70. RPS14 ENSGALG00000004588 229.44 1847.11 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
71. RPL10A ENSGALG00000002644 227.16 1828.75 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
72. RPS3A ENSGALG00000010077 227.16 1828.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
73. RPL6 ENSGALG00000004818 224.89 1810.48 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
74. HSPA8 ENSGALG00000006512 222.62 1792.20 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
75. BTF3L4 ENSGALG00000010570 218.08 1755.65 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
76. KPNA2 ENSGALG00000003584 215.81 1737.38 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
77. H2AFZ ENSGALG00000014023 213.53 1719.02 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
78. RPL13 ENSGALG00000006179 213.53 1719.02 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
79. RPL4 ENSGALG00000007711 211.26 1700.75 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
80. FKBP4 ENSGALG00000014331 204.45 1645.93 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
81. RPL36 ENSGALG00000000474 202.18 1627.65 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
82. TPT1 ENSGALG00000028872 199.90 1609.30 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
83. MEIS2 ENSGALG00000039118 197.63 1591.02 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
84. RPS8 ENSGALG00000010124 197.63 1591.02 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
85. RPL38 ENSGALG00000001465 195.36 1572.75 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
86. RPL9 ENSGALG00000000150 193.09 1554.47 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
87. HMGB1 ENSGALG00000042875 190.82 1536.20 high mobility group box 1 [Source:NCBI gene;Acc:395724]
88. IGF2BP3 ENSGALG00000010961 186.28 1499.65 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
89. RPS15 ENSGALG00000015195 186.28 1499.65 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
90. MIF ENSGALG00000006326 184.00 1481.29 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
91. ATP5G3 181.73 1463.02 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
92. CALM CALM 181.73 1463.02
93. CNN3 ENSGALG00000005597 179.46 1444.74 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
94. RPS21 ENSGALG00000005338 177.19 1426.47 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
95. EIF4A3 ENSGALG00000008530 174.92 1408.19 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
96. ERH ENSGALG00000017384 174.92 1408.19 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
97. RPL35A ENSGALG00000007611, ENSGALG00000041230 174.92 1408.19 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
98. RPL3 ENSGALG00000012172 172.65 1389.92 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. YWHAZ ENSGALG00000031387 168.10 1353.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
100. EIF4EBP1 ENSGALG00000003205 165.83 1335.02 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA