Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s41.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3810.85 30674.56
2. MT-ND5 MT-ND5 3361.64 27058.75
3. MT-ATP6 MT-ATP6 3302.73 26584.57
4. EEF1A EEF1A 2303.08 18538.11
5. gga-mir-3527 gga-mir-3527 1947.77 15678.13
6. MT-ND4 MT-ND4 1945.92 15663.24
7. MT-CYB MT-CYB 1934.88 15574.37
8. MT-CO1 MT-CO1 1625.59 13084.81
9. MT-ND1 MT-ND1 1461.74 11765.94
10. gga-mir-3533 ENSGALG00000027736 1386.26 11158.38 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1238.98 9972.88 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. NME2 ENSGALG00000002932 1045.68 8416.96 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-ND3 MT-ND3 1036.48 8342.91
14. MDK ENSGALG00000008367 810.03 6520.15 midkine [Source:NCBI gene;Acc:423196]
15. PPIA ENSGALG00000028600 806.35 6490.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. ENSGALG00000018384 ENSGALG00000018384 747.44 6016.35
17. RPL8 ENSGALG00000016232 624.09 5023.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. RPL26 RPL26 620.41 4993.85
19. RPS3 ENSGALG00000017330 587.28 4727.18 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. RPL5 ENSGALG00000005922 555.98 4475.23 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. STMN1 ENSGALG00000001475 519.16 4178.86 stathmin 1 [Source:NCBI gene;Acc:396057]
22. RPL7A ENSGALG00000003197 482.34 3882.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL7 ENSGALG00000035252 467.61 3763.92 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPS7 ENSGALG00000016392 456.57 3675.06 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. CIRBP ENSGALG00000030918 454.72 3660.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. ENO1 ENSGALG00000002377 454.72 3660.16 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPL15 ENSGALG00000011290 454.72 3660.16 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. MT-ND2 MT-ND2 440.00 3541.68
29. RAN ENSGALG00000002569 425.27 3423.11 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
30. EIF4G2 ENSGALG00000005587 423.43 3408.30 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. TMSB4X ENSGALG00000026383 423.43 3408.30 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPS27A ENSGALG00000036790 414.22 3334.17 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
33. RPS10 ENSGALG00000002813 410.54 3304.55 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. RPL23 ENSGALG00000001634 408.70 3289.74 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. ATP6V0C ENSGALG00000009229 399.49 3215.60 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. RPS23 ENSGALG00000015617 399.49 3215.60 ribosomal protein S23
37. RPS6 ENSGALG00000015082 395.81 3185.98 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
38. RPL27A ENSGALG00000005948 393.97 3171.17 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. ALDH1A2 ENSGALG00000004270 388.45 3126.74 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
40. RPL21 ENSGALG00000027035 377.40 3037.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. RPL31 ENSGALG00000016775 373.72 3008.17 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. RPL27 ENSGALG00000002837 366.36 2948.93 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. RPS4 RPS4 358.99 2889.61
44. EEF1B2 ENSGALG00000008590 357.15 2874.80 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. RPS16 ENSGALG00000026490 342.42 2756.23 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPSA 329.54 2652.56 ribosomal protein SA
47. ENSGALG00000028992 ENSGALG00000028992 327.70 2637.75
48. HMGN5 ENSGALG00000007131 318.49 2563.61 high mobility group nucleosome binding domain 5, transcript variant X1
49. RPL14 ENSGALG00000043379 309.29 2489.56 ribosomal protein L14
50. RPS20 ENSGALG00000014432 309.29 2489.56 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
51. H2AFZ ENSGALG00000014023 305.60 2459.86 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
52. RPS24 ENSGALG00000004871 303.76 2445.05 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
53. H3-IX H3-IX 285.35 2296.86
54. SNRPG ENSGALG00000028409 281.67 2267.24 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. RPL32 ENSGALG00000027142 277.99 2237.62 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. RPL23A ENSGALG00000003966 276.15 2222.81 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
57. RPS12 ENSGALG00000013990 276.15 2222.81 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
58. LDHB ENSGALG00000035836 272.47 2193.18 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
59. RPS11 ENSGALG00000017299 266.94 2148.67 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
60. RPS15A ENSGALG00000006771 266.94 2148.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. SLC25A6_1 ENSGALG00000016691 261.42 2104.24 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
62. ATP5G3 259.58 2089.43 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. RPL18A 259.58 2089.43 ribosomal protein L18a
64. ENSGALG00000018386 ENSGALG00000018386 257.74 2074.62
65. RPL36 ENSGALG00000000474 250.37 2015.30 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
66. RPL10A ENSGALG00000002644 248.53 2000.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
67. PRDX1 ENSGALG00000010243 246.69 1985.67 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
68. RPL6 ENSGALG00000004818 243.01 1956.05 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPLP1 ENSGALG00000030878 241.17 1941.24 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. RPS14 ENSGALG00000004588 237.49 1911.62 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
71. MEIS2 ENSGALG00000039118 230.12 1852.30 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
72. RPL4 ENSGALG00000007711 226.44 1822.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
73. RPS3A ENSGALG00000010077 226.44 1822.68 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
74. KPNA2 ENSGALG00000003584 219.08 1763.43 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
75. ERH ENSGALG00000017384 213.55 1718.92 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
76. FKBP4 ENSGALG00000014331 213.55 1718.92 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
77. RPS15 ENSGALG00000015195 209.87 1689.30 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
78. BTF3L4 ENSGALG00000010570 208.03 1674.49 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
79. CDK1 ENSGALG00000003085 208.03 1674.49 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
80. RPL13 ENSGALG00000006179 208.03 1674.49 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
81. RPS29 ENSGALG00000012229 208.03 1674.49 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
82. HNRNPDL ENSGALG00000023199 206.19 1659.68 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
83. EIF3F ENSGALG00000005326 204.35 1644.87 eukaryotic translation initiation factor 3 subunit F
84. ENSGALG00000002696 ENSGALG00000002696 204.35 1644.87
85. RPL35A ENSGALG00000007611, ENSGALG00000041230 204.35 1644.87 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
86. HMGB1 ENSGALG00000042875 196.99 1585.63 high mobility group box 1 [Source:NCBI gene;Acc:395724]
87. HMGB2 ENSGALG00000010745 196.99 1585.63 high mobility group box 2 [Source:NCBI gene;Acc:396482]
88. RPL9 ENSGALG00000000150 195.14 1570.73 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
89. EIF1 ENSGALG00000028517 187.78 1511.49 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
90. CALM CALM 185.94 1496.68
91. CNN3 ENSGALG00000005597 185.94 1496.68 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
92. CRHOA CRHOA 185.94 1496.68
93. RPLP2 ENSGALG00000034811 185.94 1496.68 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. EIF4EBP1 ENSGALG00000003205 184.10 1481.87 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
95. YWHAZ ENSGALG00000031387 184.10 1481.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
96. TPT1 ENSGALG00000028872 182.26 1467.06 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
97. RPS8 ENSGALG00000010124 180.42 1452.25 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
98. RPL12 ENSGALG00000008806 178.58 1437.44 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
99. RPL3 ENSGALG00000012172 178.58 1437.44 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. TXN ENSGALG00000015704 178.58 1437.44 thioredoxin [Source:NCBI gene;Acc:396437]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA